Ictalurus punctatus (channel catfish): 108279108
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Entry
108279108 CDS
T04658
Symbol
cadm1a
Name
(RefSeq) cell adhesion molecule 1a isoform X1
KO
K06781
cell adhesion molecule 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
108279108 (cadm1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ipu04515
]
108279108 (cadm1a)
Cell adhesion molecules [BR:
ipu04515
]
Immunoglobulin superfamily
Nectin family
108279108 (cadm1a)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
V-set
C2-set_2
Ig_5
C1-set
DUF4307
DUF3439
Syndecan
Motif
Other DBs
NCBI-GeneID:
108279108
NCBI-ProteinID:
XP_017348571
Ensembl:
ENSIPUG00000024826
UniProt:
A0A2D0T1A2
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Position
18:complement(16485110..16824973)
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AA seq
439 aa
AA seq
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MANAASGALASLLLLSTIAAAVLQGAAQYPVQSQNLVTDNISVVEGETATISCRVKNNDD
SVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSDNELRVALSNVSLSDEGRYVCQLYTDPP
QEAYADITVLIPPGNPIIESREEIVSEGNETEMTCTAIGSKPAATIRWMKGDRELQGKSK
VDITYDRMYTVTSWVRLTVTKEDDGIPVVCIVDHPAVKDFQAQKYLEVQYKPEVKIVVEF
PQGLTREGENLELTCKTKGKPEPQQVNWVKVDDDVPSHAVITGSDLYIENLNKSYNGTYR
CVASNSVGESYDDYILYVYDAPTTTPIPTTATTTMYTTTSLPGITQDAAPSTEPAAHDSR
AGAGAQRAVDHAVIGGVVAVVVFAMLCLLIILGRYFARHKGTYFTHEAKGADDAADADTA
IINAEGGHNNSDEKKEYYI
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacgcggccagcggagctcttgcaagtctcctgctattatctacgattgcggcg
gctgttcttcaaggagcagctcagtatccagtccaaagccagaacctggtgacagacaac
atctccgtggtggagggggaaacggccactatcagctgtcgagtcaaaaataacgacgac
tccgtcatccagctcctgaaccccaacagacagaccatctacttcagagatgtcagaccc
ttgaaggactctcgctttcagctggtcaacttctcagacaacgagttgcgcgtggctctg
tccaacgtgtctctctcggatgagggcagatacgtgtgtcagctctacacggaccctccg
caggaggcctacgccgacatcactgtgctgatcccaccaggcaacccaatcatcgagtcg
cgtgaggaaattgtaagcgagggcaatgagacggagatgacctgcacagctattggcagc
aaaccagctgccaccatcagatggatgaagggagacagagagctgcaaggaaagtccaaa
gtggacatcacatatgacaggatgtacactgtaaccagctgggtaaggctcactgttaca
aaggaggatgacggtattcctgttgtctgcatcgtggaccacccagcagtcaaggacttt
caagctcagaaatacctggaggtgcagtataaaccagaggtgaagattgtcgtggagttc
cctcaaggactaaccagagagggggaaaacctggagctgacgtgcaagaccaaaggcaaa
ccagagcctcagcaggtgaactgggtgaaggtggacgacgacgtgccgtctcatgccgtc
atcactggctcggatctttacatcgagaaccttaacaagtcctacaacggtacttaccga
tgcgtggcctcgaactcggtgggagaatcctacgatgattacatcctctacgtgtacgat
gcccccaccaccacccctatacccactacagccaccaccaccatgtacaccacaacctct
ctcccaggtatcacccaagacgctgcgcccagcactgaacccgctgctcacgactccaga
gcaggagcaggagctcaaagagcggtggaccatgctgtcatcggaggggttgtggccgta
gttgtcttcgccatgctttgtcttcttatcattttgggccgatacttcgcaagacacaaa
ggtacctacttcacacatgaagcgaagggggcagatgacgcagctgatgctgatacggcc
atcatcaatgctgaaggtggacacaacaactcggatgaaaagaaggaatactatatctga
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