Ictalurus punctatus (channel catfish): 108279173
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Entry
108279173 CDS
T04658
Name
(RefSeq) THO complex subunit 4 isoform X1
KO
K12881
THO complex subunit 4
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03013
Nucleocytoplasmic transport
ipu03015
mRNA surveillance pathway
ipu03040
Spliceosome
ipu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108279173
09122 Translation
03013 Nucleocytoplasmic transport
108279173
03015 mRNA surveillance pathway
108279173
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
108279173
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108279173
03041 Spliceosome [BR:
ipu03041
]
108279173
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108279173
TREX complex
108279173
Spliceosome [BR:
ipu03041
]
Complex C
Other components
EJC/TREX
108279173
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
108279173
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
Motif
Other DBs
NCBI-GeneID:
108279173
NCBI-ProteinID:
XP_017348691
Ensembl:
ENSIPUG00000009469
UniProt:
A0A2D0T1M3
LinkDB
All DBs
Position
2:24774138..24777341
Genome browser
AA seq
281 aa
AA seq
DB search
MVDKMDMSLDDIIKQSKQQRGGAGGRGGRGGRGRGGAGRGGGGAGRLGANAGGSFGVRGG
GSGPMRNRQNLSRGRSRPTPYSRPKQLPDKWQHDLFDNGYSTNSGGGGGGGGGGVGVETG
GKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ
YNGVPLDAFDSVLGRPMNIQLVTSQIDAQRRAPMQGLNRGGGGMNRNKMGSFGGMQRGRG
GRGGGGLRGRGRGARGNNKQQLSAEELDAQLDAYNARMDTS
NT seq
846 nt
NT seq
+upstream
nt +downstream
nt
atggtagacaaaatggatatgtcgttggacgacatcatcaagcagagtaagcagcagaga
ggaggcgcgggtggccgcggtgggagaggaggccgaggccgaggcggcgctggccgcggt
ggtggaggcgccgggcggctcggagctaacgcaggcggaagctttggcgtccgtggcgga
ggttcaggccccatgaggaatcgtcagaacctgagccgtggcagaagcagacccacgccg
tacagcaggcccaagcagctccctgacaagtggcagcatgacctgttcgacaacggttac
agcaccaattctggaggaggtggtggcggcggaggaggaggagtgggcgtggaaactggc
gggaagctgcttgtatccaatcttgactttggtgtctccgatgcagacattcaggaactt
tttgcagaatttggcaccctgaagaaggctgcggtccattacgaccggtccggacgcagt
cttggcacggcagacgtccactttgagaggaaagcagatgctttgaaagccatgaagcaa
tacaacggtgttcctcttgatgcttttgattctgttctaggtcgcccaatgaacattcag
ctagtcacatcacagattgacgcacaaagacgagctccaatgcagggtctgaatcgtggt
ggtggaggcatgaacaggaacaagatggggagctttggaggcatgcagagaggacgggga
ggtcggggaggtggagggctcagaggccgtggcagaggagcaaggggcaataacaagcag
cagctttcagcagaagaattagatgcccagctagatgcctacaatgccaggatggacacc
agctaa
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integrated database retrieval system