KEGG   Ictalurus punctatus (channel catfish): 108279173
Entry
108279173         CDS       T04658                                 
Name
(RefSeq) THO complex subunit 4 isoform X1
  KO
K12881  THO complex subunit 4
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu03013  Nucleocytoplasmic transport
ipu03015  mRNA surveillance pathway
ipu03040  Spliceosome
ipu05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108279173
  09122 Translation
   03013 Nucleocytoplasmic transport
    108279173
   03015 mRNA surveillance pathway
    108279173
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    108279173
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ipu03019]
    108279173
   03041 Spliceosome [BR:ipu03041]
    108279173
Messenger RNA biogenesis [BR:ipu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     108279173
    TREX complex
     108279173
Spliceosome [BR:ipu03041]
 Complex C
  Other components
   EJC/TREX
    108279173
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    108279173
SSDB
Motif
Pfam: RRM_1 FoP_duplication
Other DBs
NCBI-GeneID: 108279173
NCBI-ProteinID: XP_017348691
Ensembl: ENSIPUG00000009469
UniProt: A0A2D0T1M3
LinkDB
Position
2:24774138..24777341
AA seq 281 aa
MVDKMDMSLDDIIKQSKQQRGGAGGRGGRGGRGRGGAGRGGGGAGRLGANAGGSFGVRGG
GSGPMRNRQNLSRGRSRPTPYSRPKQLPDKWQHDLFDNGYSTNSGGGGGGGGGGVGVETG
GKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ
YNGVPLDAFDSVLGRPMNIQLVTSQIDAQRRAPMQGLNRGGGGMNRNKMGSFGGMQRGRG
GRGGGGLRGRGRGARGNNKQQLSAEELDAQLDAYNARMDTS
NT seq 846 nt   +upstreamnt  +downstreamnt
atggtagacaaaatggatatgtcgttggacgacatcatcaagcagagtaagcagcagaga
ggaggcgcgggtggccgcggtgggagaggaggccgaggccgaggcggcgctggccgcggt
ggtggaggcgccgggcggctcggagctaacgcaggcggaagctttggcgtccgtggcgga
ggttcaggccccatgaggaatcgtcagaacctgagccgtggcagaagcagacccacgccg
tacagcaggcccaagcagctccctgacaagtggcagcatgacctgttcgacaacggttac
agcaccaattctggaggaggtggtggcggcggaggaggaggagtgggcgtggaaactggc
gggaagctgcttgtatccaatcttgactttggtgtctccgatgcagacattcaggaactt
tttgcagaatttggcaccctgaagaaggctgcggtccattacgaccggtccggacgcagt
cttggcacggcagacgtccactttgagaggaaagcagatgctttgaaagccatgaagcaa
tacaacggtgttcctcttgatgcttttgattctgttctaggtcgcccaatgaacattcag
ctagtcacatcacagattgacgcacaaagacgagctccaatgcagggtctgaatcgtggt
ggtggaggcatgaacaggaacaagatggggagctttggaggcatgcagagaggacgggga
ggtcggggaggtggagggctcagaggccgtggcagaggagcaaggggcaataacaagcag
cagctttcagcagaagaattagatgcccagctagatgcctacaatgccaggatggacacc
agctaa

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