Ictalurus punctatus (channel catfish): 108279181 Help Entry 108279181         CDS       T04658                                  Name (RefSeq) nucleoporin NUP188 isoform X1   KO K14311   nuclear pore complex protein Nup188 Organism ipu  Ictalurus punctatus (channel catfish) Pathway ipu03013   Nucleocytoplasmic transport Brite KEGG Orthology (KO) [BR:ipu00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     108279181  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:ipu03019]     108279181 Messenger RNA biogenesis [BR:ipu03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     Nuclear pore complex      108279181 SSDB OrthologParalogGFIT Motif Pfam:  Nup188_N-subdom_III Nup188_N Nup188_SH3-like Motif Other DBs NCBI-GeneID:  108279181 NCBI-ProteinID:  XP_017348705 Ensembl:  ENSIPUG00000007115 UniProt:  A0A2D0T292 LinkDB All DBs Position 18:1973724..1995533 Genome browser AA seq 1729 aa AA seqDB search MADAEICIRSSRELWTILLGRSALREPSQIHAELERYGERLLQGLAYYKPPSSSSADKLK ADKDVPQSLKEFGLRISKLLGLDEQQSVQILQCYLQEDYRGTRNSLKAVLQDERQSQALL LKIADYYYEERVSLLRCVLLLLTYFQDERHPYREEYATCVNKLEKDLVSNYQQQFEALFN AEAPTWETHGNLMTERQVSRWFSQCLREQALLLEVLFLYYAYFEMPSRDLLTFARLFKEQ GFGQRQTNRHLVDKSMDALVDRIGYFSCLILVEGMDIDFLHKCALEDRTEQHQLCSTHDI NKEMDQMLLTFGDISHHGPVLLAWVLLRHTLQPVEAGPTIKRLGHTTLQLGVFQYLTDML QALGSTGNNCTASTARMCIYGLLSFVVTSFEEDTLGSQQHLINVACEVLAAPSLAELFWE SKPNVGLEMILDSAVGVFPYKIGPLLQLLTALLSDKSTAKRVYMILDKMSFYTEVCKHKP SDVLSSEDETLWRRQTPKLLYPLGAGQTNLRMPQGCYGQVSASEHGYMVRWDYSYSSWTL FTCEIEMLLHVVSTADVLAHCERVKPILDLVHKIISTDWTVSDCLLPLTSRIYMLLQRLT SVINPPVDVIASCVNCLIVLATRQPAKVWSSLQHTGFLPFASTPLTNMAQAISAEGMKAG NYGNLLVLIEQPRGEYAVTIAFLRLVTTLVKGQVGSTQSRGLIPCVLLVLKEMLPTYHKW RYNTHGVREKIGCLILELVHAILNLSPEGESQGSTPSLQSLCIYSLANTEAGQAVVNIMG VGVDTINTVLAAQPSSSGSCEGPGQVLIQTVKLAFSVTNNVIRLKPHTDTVSPLEQALTQ HGGHSNNLIAVLAKYIYHKHDPALPRLAVQLLKRLASVAPMSVYACLGSDAAAIRDAFLR HMQSKTVDLRVKVTILEFLTVAVETQPGLIELFLNLETKEGSEGTKEFSLGEWSCLSVVL ELLDSDVQSQSWCPPLLQRAALAFLHALWQDRRESALSVLRSRKRFWDNLTAPLFGTLPP PSETTEPCILESCAFVMKIIGLEIYYVVGGQLEDSLKAALQRLSSQRRYEFWSQYVRELV CVTCDDEEGGVRSLPETQMLISAWRTLLILSTSHSDVMHLKEDSVRLKLFMDVLEGTKAA LLMPQSVACLRLGSMMATLLLIILKQWKSVLVSAPALLPPLSLMLESVLQADQQLMERTK AKLFSALISALHIQGLNGGEITQLPQLLLCVCETVQDEAMALIDSTRHMIQKGDTQEDSM ETDAPRSLQKDQRDSVCVLALHLSKELCRADEDGEQWLQVMRKLPVLPSVLSALELSLRS KHNLYFTEAALHLLLTLARTSPGAAAVAGAGVIQSICLPLLSVYEGPANGATQAFSRKPV DAPSWPGVYRLCLSLMESLLKTLRYNFINEALDFVGVHQERILQCLSAVRTVQSLACLDE ADHTVGFLLQLSSFCKEWHFHLPQLLRDVQVNLCYLCQTCTYLLHSKKMLHHYLQAKNGE ALPQRPRPQQALQPVSKEQLSVGEQEEVESKALQAVQCSLLKILSKTLATLQHFTPDCCQ ILLDQSMDLAEYRTLFVLSFTTPAFDSDVAPSFGTLLATINVALSMLGEIEKKKEPVVSS EETQAMKSLLMFSMEDCFYVLISQAMRCLKDPTVLPRDKQRVKQELSSELSTLLSTLYRF FRRGSPSSPASGLLPSPQTKPTTSGSKVTPEGQEPFIQLVQAFVRHVQR NT seq 5190 nt NT seq  +upstreamnt  +downstreamnt atggcggacgcggagatttgtatcagaagcagtcgggagttatggaccatcttgctgggg agatctgctcttcgggaaccgtcccagatccatgcggagttagagcgatatggagagcgg ttgttgcagggcctggcgtactacaaaccacccagctcttcatcagcagacaagttaaag gccgataaagatgttcctcagtcgcttaaagaattcggactccgcatcagcaaacttctg gggctggatgagcagcagagtgtacagattctgcagtgctacctgcaggaagactacaga ggaactcgaaactccctgaaggctgtgctgcaagatgagagacaaagccaggctttactg ctcaagatagcagattactactatgaagagagagtttctctcttgcgctgtgtcctcctc ctcctcacctacttccaggatgagcgacatccctatagggaggagtatgctacctgtgtg aacaagctggagaaagatctcgtgtcaaactaccaacagcagtttgaggctcttttcaat gcagaagctccaacatgggaaacccatggaaacctcatgacggagagacaggtgtctcgg tggttctctcagtgcctgagggagcaggcattgttgttggaggtcctgtttctttactat gcctacttcgagatgccttcaagagaccttttgacctttgctcggctgtttaaggaacag ggtttcggacagcgccaaacaaacagacatctcgtggacaagagcatggatgccctagtg gaccgaatcggatatttcagctgtttgatcctggtcgaggggatggacatcgacttcctg cataaatgcgctctggaagaccggacggaacagcaccaactctgcagcacgcacgacatc aacaaggagatggatcagatgttgctgacgttcggtgatatctctcaccacggcccggtt ctgctggcctgggtccttctgagacacactctgcaaccggtcgaagccggaccgaccatc aaacgcctcggacacaccactttgcagctcggggtgttccagtatctcacggacatgttg caggccctcggcagcacggggaacaactgcactgccagtactgcacgtatgtgcatctac ggtctcctctcatttgtagtcacttcgtttgaagaggacacgctgggcagtcagcagcac ctgatcaacgtcgcgtgtgaggttctcgctgccccgagtctagccgagctcttctgggag tcgaaacccaatgtgggtttggagatgatcttggactcagcagtgggtgttttcccttat aagattggaccgttattgcagctactcacagcactgctgtctgataaatcaactgccaag agagtgtacatgattctggataaaatgtccttctacacggaggtgtgcaaacacaaaccc agtgacgtgctgtccagcgaggacgagacactgtggcggagacagacaccgaaacttctc tatcctctgggcgcgggtcagaccaacttgcggatgccgcaggggtgttacggtcaagtt tcggcgagcgagcacggctacatggtgcgctgggattattcttattcgtcatggaccctc ttcacctgtgagattgagatgctgctgcatgtcgtctccaccgctgacgtgttggcgcac tgcgagcgagtgaagccgattttggacctggtgcataagatcatcagcactgactggaca gtgtctgactgtttgctgcccctcacgtcacgcatctacatgctgctgcagaggctgacc tccgtaataaacccgccggtggacgtcatcgcatcgtgtgtcaactgcctcatcgtgctc gccacaaggcagcctgcgaaggtttggtccagtctgcagcacactggcttcctacctttc gcttccacccctctaaccaacatggcacaggccatcagtgcggaaggcatgaaggcaggt aactacggtaacctgctggtgctgatcgagcagccaagaggagagtatgcagtgaccatt gcctttttgagactggtgaccacgctcgtcaagggtcaggtgggcagtactcagagcaga gggctcattccctgcgtgcttctggtcctgaaggagatgctacctacctaccacaagtgg cgctataacacacatggtgtccgggagaagattggttgtttgattctggagctggtccat gcaatccttaatctaagtcctgagggggagtcacagggcagcactcccagcctgcagtct ctatgtatctacagtctggcgaacactgaagcaggccaggccgtggtgaacatcatgggc gtgggagtagacaccatcaacacagtgctagcagctcagcccagcagtagtgggagctgt gaaggtcctggtcaggtgttgattcagacagtgaagttggctttctcggtaaccaacaat gtcatccgactcaaaccacatacagacaccgtttctcctctggagcaggcactcacacag catggtggccatagcaacaacctgatagcagttctggccaagtacatttaccacaaacac gatcctgctctgccgagactcgctgttcagctgctgaagagactcgcctcggtggcaccc atgtcagtgtacgcttgtttaggcagcgatgcagcagccataagggatgcattccttcga cacatgcagagcaaaacggtggacctgcgcgtcaaagtcaccatcttggagtttctcacc gttgccgtggagacgcagccgggtctcatcgagctcttcctcaacctcgaaaccaaggag ggcagcgaggggacaaaggagttctccctgggcgagtggagctgtctgtctgtggttctg gagctgttggactcggatgtgcagagccagtcgtggtgtcccccactgctgcagcgggca gcgctcgccttcctacacgcgctgtggcaggaccgcagagagagcgcgctgtctgtacta cgcagcaggaagaggttctgggacaatctgacagcaccgctttttggaacgcttccccca ccatcagagaccacagagccgtgtattttggagtcttgtgcctttgtaatgaagatcatc ggcctggagatctactatgttgtcggcggtcagctggaggactctctgaaagccgcactg cagcgcctcagctcccagcgtcgctatgaattttggtctcagtacgtcagggagctggtg tgcgtcacgtgtgatgacgaggagggaggagtgaggtcactgcccgagactcagatgctc atctcggcgtggcggaccctactcatcctctccactagccattctgatgtaatgcacctt aaggaagactctgtcaggttgaagctcttcatggatgtcctggaagggaccaaagcagca ttactgatgccccagtctgtagcatgtctgcgtttgggctccatgatggccaccttgctg cttatcatcctcaaacaatggaaaagtgtgttggtgtcagctccagctctccttcctcct ctctctctgatgttagagagcgtacttcaggctgatcagcagctgatggagagaaccaaa gccaagctcttctcagctctcatatcagctctgcacattcagggccttaatggaggagag attacccagctgcctcagctgttactatgtgtatgtgagaccgtccaggatgaggctatg gctttgattgacagcacacgtcacatgatccaaaaaggggacacccaggaggacagcatg gagacggacgcaccacgtagcctccagaaagaccagcgcgactctgtgtgtgttttagct ctgcacctgtctaaagagctgtgcagggctgatgaggatggtgagcagtggctgcaggtg atgaggaagcttcccgtcctgccctcggtcctcagcgcgcttgagctcagcctgcgctcc aaacacaacctctacttcacggaggcagctctccacttgctgctcactctagctagaacg tcaccgggggcagcagcggtagcgggtgccggcgtgattcagagcatctgtctccctctt ctcagtgtgtatgaaggcccggctaatggagccacacaggcgttctcccgtaagcccgta gacgccccctcctggcccggtgtgtatcggctttgtctgtctctgatggagagtctgctc aagacgctgcgctacaacttcatcaacgaggcactcgactttgtcggagttcaccaagag cgcatcctccagtgtctgagtgcggtgcgtacagtgcagtctctagcgtgtttggatgaa gccgatcacaccgtgggtttcctgctgcagctgtccagcttctgtaaagagtggcacttc catctgccacagctactccgagatgtgcaggtgaatctctgttacctgtgccagacatgt acatatcttttgcacagcaagaaaatgttacaccactacctccaggcaaaaaatggcgag gctctgccgcagaggccccgcccacagcaagctctacagcccgtctctaaagagcagctg tcggttggagagcaagaggaggtggagtctaaagcgctgcaggcggtgcagtgcagcctt ctgaagattctcagcaaaactctggcgacattacagcactttacaccagactgctgccaa atcctgttagaccagtctatggaccttgcggagtacagaactttgtttgtgctgagtttt acgacaccggcctttgattcggatgtcgctccgtcgttcgggaccctgctggccaccatc aacgtggcactgagcatgctgggagagatagagaaaaagaaggagcctgtggtgtcatct gaggaaacgcaagcaatgaagtccttgttgatgttttcgatggaggactgtttctacgtg ttgatttcacaggccatgcgatgtttaaaagatccgacggttctgccccgagacaaacag agagttaaacaggagctcagctctgaactgagcacactgttgtcgacgttgtacaggttt tttcggcgagggtcaccttcgtcccccgccagtggacttctgccttccccacagaccaaa cccaccacttctgggtcaaaggtcacgccagaaggccaggaaccattcatacagcttgtc caggctttcgtacggcacgtccaacgctag

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