Ictalurus punctatus (channel catfish): 108279259
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Entry
108279259 CDS
T04658
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ipu03041
]
108279259
03016 Transfer RNA biogenesis [BR:
ipu03016
]
108279259
Enzymes [BR:
ipu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108279259
Spliceosome [BR:
ipu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
108279259
Transfer RNA biogenesis [BR:
ipu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
108279259
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
108279259
NCBI-ProteinID:
XP_017348836
Ensembl:
ENSIPUG00000003494
UniProt:
A0A2D0T216
LinkDB
All DBs
Position
2:complement(9809599..9824661)
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AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMEWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDHQEGKKGRAAVKTGGAVFNKWQMNPYDRSPAFAIGPDGLCCQSREFKEWH
GCRSTRAVTKGKYYYEVSCHDQGLCRIGWSTSQAALDLGTDKFGFGFGGTGKKSHNKQFD
SYGEEFTMHDTVGCYIDLESCQISFSKNGNDLGLAFEIPKNLKNEPFFASCVLKNAELKF
NFGGEPFKNAPKDGFVAVDQASDGHVVKTTQTGSATVSQVKSSSTAPKALILEPSKELAE
QTLNNVSQCKKYVDNPKLRDLLIIGGVAAKEQLSVLESGVDIVVGTPGRLDDLISTGKLD
LSQIRFLVLDECDGLLSAGYTDFIMRVYNKIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPETVHHVVVPVNPKKDRFWEKLGKNHIQTDEVHAKDNTRPGAN
TAEMWSEAIKILKGEYTIRAIKEHKMDQAIIFCRTKIDCDNMEQYLIAQGGGPDKKGHEF
SCVCLHGDRKPNERKYNLERFKKKEVRFLICTDVAARGIDVHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAMEKEKVWYHVCANRGRGCYNTKLKDDGGCTIWYNEKELLG
DIEEHLKCTITQCEPDIKVPLDEFDGKVTYGQRRAAGGGLYKGHVDILAPTVRELANLER
EAQTSFLQLGYLPNQLFKSF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgttttctgaaatgggcgtgatgcctgaaatcgctcaggctgttgaagagatg
gagtggctgcttcccactgacatccaagccgagtccattcccttgatccttggcggagga
gacgttctcatggccgctgagacaggaagtggcaaaactggggctttcagcatcccggtg
atccagattgtgtatgagactctgaaagatcaccaggaggggaagaaaggccgtgctgca
gtgaagacaggaggagcagtgtttaataaatggcagatgaacccatacgaccgaagccca
gcatttgctatcggtccagacgggctttgctgccagagcagagagtttaaggagtggcat
ggctgccgttccacccgggccgtgactaaaggaaagtattactacgaagtctcctgccac
gaccaaggcttgtgcaggatcggttggtccactagtcaggcagctctggaccttggtacg
gacaagtttggcttcggcttcggagggacagggaagaaatcccacaataagcagtttgat
agttatggagaggagttcactatgcacgacaccgtcggatgctacatcgacctggagagt
tgccagatatccttctccaaaaatgggaatgatcttggcttggcgtttgagattcccaag
aacttgaaaaatgagccattcttcgcctcctgtgtgcttaagaatgctgaactgaagttt
aatttcgggggagagcctttcaaaaatgcccccaaagacgggttcgttgctgtggatcaa
gcatccgatggccacgtggtcaaaaccactcagactggcagtgccacggtgagtcaggtc
aaatcaagctccaccgcccctaaagctctgatcttggagccgtcgaaagaattggccgag
cagaccctcaacaacgtcagccaatgtaagaaatacgtggacaatcccaaactacgagat
ctgctgatcatcggaggcgtggcagccaaagagcagctgtctgttttggaaagcggagtt
gatatagtggttggcacacccggcaggcttgatgatctcatttccacaggaaaactcgat
ctgtcccaaatccgcttcctggttctggatgagtgtgatggactgctttccgccggatac
accgacttcatcatgagggtctacaacaaaatcccccaggtcacctctgatggaaagaga
ctgcaggtgatcgtgtgctcggcaaccctgcactcgttcgacgtgaagaagctgtcggag
aagatcatgcacttccccacgtgggtggacctgaaaggtgaagactccgtgcctgagacg
gtgcatcacgtggtagtgcctgttaaccccaaaaaggacaggttctgggaaaagctgggc
aaaaaccacatccagactgatgaagtgcatgcgaaagacaacacaaggcctggagccaac
actgcagagatgtggtccgaggcaatcaaaatcctgaagggcgagtacacgatccgtgca
attaaggagcacaagatggaccaagccatcatcttctgcaggaccaagattgactgcgac
aacatggagcagtacctgatcgcacaaggaggaggtcctgataagaaagggcatgagttc
tcatgtgtctgtcttcacggtgaccgtaagcccaacgagcgcaaatacaacttggagcgg
ttcaagaaaaaggaggtgaggtttttgatttgcacagacgtagcagccagaggaatcgat
gtccacggcgttccatacgtcattaatgtgaccttgccggacgagaaacagaattatgtg
catcgcatcggaagagtgggcagggcggagaggatgggtctggcaatttctctggttgcc
atggaaaaggagaaggtatggtatcacgtttgtgctaacagaggccgaggctgctataac
accaagttaaaggacgatggaggctgcaccatatggtacaacgagaaagagctgttggga
gatatcgaggaacacctgaagtgcaccattactcaatgcgagccggacatcaaagtgccc
ctagatgaatttgatggcaaggttacttatggccagcgccgagctgctggaggtggtctc
tataagggccatgtggatattttggcacccacggtacgggaacttgctaaccttgagcga
gaggcgcagacatctttcctgcaactgggctatctcccgaatcagctcttcaaatcgttc
tga
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