Ictalurus punctatus (channel catfish): 108279263
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Entry
108279263 CDS
T04658
Symbol
col1a1a
Name
(RefSeq) collagen, type I, alpha 1a isoform X1
KO
K06236
collagen type I alpha
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04510
Focal adhesion
ipu04512
ECM-receptor interaction
ipu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108279263 (col1a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108279263 (col1a1a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
108279263 (col1a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ipu00536
]
108279263 (col1a1a)
Glycosaminoglycan binding proteins [BR:
ipu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108279263 (col1a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
TILa
Motif
Other DBs
NCBI-GeneID:
108279263
NCBI-ProteinID:
XP_017348849
Ensembl:
ENSIPUG00000002759
UniProt:
A0A2D0T1R1
LinkDB
All DBs
Position
2:29424696..29444609
Genome browser
AA seq
1450 aa
AA seq
DB search
MFSFVDIRLALLLSATVLLARGQGEDDRTAGSCTLDGQVYNDRDVWKPEPCQICVCDSGT
VMCDEVICEDTSDCANPVIPPDECCPVCPDDAEYKEPRVEGPRGEPGEKGDRGPAGPPGN
DGIPGQPGLPGPPGPPGPPGLGGNFSPQLSGGYDEKSGGAALAVPGPMGPMGPRGPPGPP
GLSGPQGFTGPPGEPGEAGSSGPMGPRGPAGPPGKNGEDGESGKPGRPGERGPPGAQGAR
GFPGTPGLPGIKGHRGFSGLDGSKGDTGPAGPKGEPGAAGENGTPGAMGPRGLPGERGRS
GPNGAAGARGNDGAAGAAGPPGPTGPAGPPGFPGGPGAKGEVGPQGARGGEGPQGARGEP
GSPGPAGAAGPAGNNGADGAPGAKGAPGAAGIAGAPGFPGPRGPPGAAGTPGAVGPKGNT
GEVGAHGAKGDAGAKGEPGIPGVQGPPGPAGEEGKRGARGEPGPAGGRGPPGERGAPGGR
GFPGADGAAGPKGSPGERGGPGIVGPKGASGEPGRNGEPGMPGSKGMTGSPGSPGPDGKM
GAAGPSGQDGRPGPPGPVGARGQPGVMGFPGPKGAAGEAGKPGERGVMGAIGAPGAAGKD
GDVGAPGAPGPAGPAGERGEQGPAGSPGFQGLPGPQGATGEPGKHGEQGLPGEVGAPGPS
GSRGDRGFPGERGAPGIAGPAGARGSPGSAGNDGAKGEPGAAGAPGAQGAPGLQGMPGER
GASGLPGLKGDRGDQGAKGADGAPGKDGIRGLTGPIGPHGPAGPQGDKGEPGAAGPVGPT
GARGPPGERGENGAPGPAGFAGPPGTDGQPGAKGEAGDTGAKGDAGAPGPAGATGAPGPQ
GPVGSTGPKGARGPAGPPGATGFPGAAGRLGPPGPSGNAGPPGPPGAPGKEGAKGLRGET
GSPGRTGEIGASGPPGTPGEKGTPGAEGPPGAPGIPGPHGLAGQRGIVGFPGQKGERGFP
GLPGPSGEPGKQGPGGPSGERGPPGPMGPPGLAGPPGEPGREGTPGNEGSAGRDGAAGPK
GDRGESGAAGAPGAPGPPGAPGPVGPAGKTGDRGESGPAGPAGAAGPAGPRGPAGPAGAR
GDKGETGEAGERGMKGHRGFTGMQGPPGPPGPSGESGPAGASGPAGPRGPVGAAGSSGKD
GMSGLPGPIGPPGPRGRTGEIGPAGPPGPPGPPGPPGPSGGGFDIGFIAAPQEKAPDPFR
HYRADDANVMRDRDLEVDTTLKSLSQQIENIHSPDGTKKNPARTCRDLKMCHPDWKSGEY
WIDPDQGCNQDAIKVYCNMENGETCVYPSQSDVPKKSWYTSKNIKEKKHVWFGEAMTDGF
QFEYGSEGSKPEDVNIQLTFLRLMSTEASQNITYHCKNSIAYMDQATGNLKKALLLQGSN
EIEIRAEGNSRFTYSVTEDGCTSHTGAWGKTVIDYKTTKTSRLPIIDIAPMDVGAPDQEF
GIEVGPVCFL
NT seq
4353 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatatccggctggcgctgttgctcagcgcaacagtgcttttagca
aggggacaaggagaggacgaccgcacagctggcagctgcacgctagacggtcaggtctac
aatgatcgtgatgtgtggaaaccagagccatgccagatttgtgtgtgtgacagcggaacg
gtcatgtgcgacgaggtgatctgcgaggacacaagtgactgcgccaacccagtgattccc
cctgatgagtgctgtcctgtctgccctgatgacgcagaatacaaagaacccagagttgag
ggacccaggggtgagcctggtgagaagggtgacaggggtcctgctggtcctcccggcaat
gatggaattcctggacaacctggacttcctggacctccaggcccccctggaccccctggc
cttggcggaaacttttctcctcagctgtctggaggttatgatgagaaatctggtggcgct
gccttggctgttcctggcccaatgggacccatgggccctcgtggtccccctggacctcct
ggactttctggacctcaaggttttactggccctcctggtgagcctggtgaggctggttct
tctggtccaatgggtccccgtggtccagctggtcctcctggaaagaacggagaagatggt
gagtctggcaagcctggtcgccctggtgagcgtggtcctcctggcgcacagggtgcccgt
ggattccctggaactcccggacttcctggtatcaagggacacagaggtttcagtggtcta
gatggatctaagggagacactggccctgctggacccaagggagagcctggtgcagctgga
gagaatggaacccctggcgctatgggtcctcgtggtcttcctggtgagagaggccgttct
ggtcctaatggagctgctggtgctcgtggtaacgatggtgctgctggagctgctggtcct
cctggcccaactggccctgctggtcctcccggattccccggtggccctggagctaaagga
gaggttggtcctcagggagctcgtggaggtgagggaccccagggtgctcgtggtgagcct
ggtagccctggccctgctggtgctgctggacctgctggcaacaatggtgctgatggtgct
cctggtgctaagggcgcccctggtgccgctggtattgctggtgctcctggcttccctgga
ccccgtggtcctcctggagctgctggaactcctggtgctgttggtcccaaaggtaacact
ggtgaagttggtgctcatggtgccaagggagatgctggtgccaagggagaacctggtata
cccggagttcaaggtccccctggacccgctggtgaggagggcaagagaggagcccgtggt
gagcctggtcctgctggtggccgtggaccccctggagagcgtggtgctcctggtggtcgt
ggtttccctggtgctgatggagctgcaggccccaaaggttcccctggtgagcgtggaggc
cctggcattgttggacctaagggtgcctctggtgagcctggccgcaacggtgagcctggc
atgcctggatcaaagggtatgactggtagccctggcagccctggacctgatggaaagatg
ggagctgctggtccttctggacaagatggccgtcctggacccccaggccctgttggagcc
agaggtcagcctggtgttatgggattccctggacccaagggtgctgccggtgaggctggc
aaacctggtgagagaggtgtgatgggtgccattggtgcccctggtgctgccggtaaggat
ggtgatgttggtgctcctggtgcccctggccctgctggacccgctggtgagagaggtgag
cagggacctgctggttcacctggattccagggtctgcccggacctcagggtgctactggt
gaacctggaaagcacggtgagcagggattgcctggtgaagttggtgcccccggaccttcc
ggatctagaggtgatagaggattccctggtgagcgtggagcccctggtattgctggtcct
gctggcgcacgtggttctcctggttcagctggtaacgatggtgccaagggagagcctggt
gctgccggtgcccctggtgctcagggtgctcctggacttcagggtatgcctggtgagcgt
ggtgcttctggtctgccaggtctcaagggagacagaggtgatcaaggtgctaagggtgct
gatggtgcccctggtaaggatggcatccgtggtttgactggacctattggacctcatgga
ccagctggccctcagggtgacaagggagagcctggtgctgctggacctgttggacctact
ggtgcccgtggaccccctggagagcgtggtgagaatggtgcgcctggacctgccggattt
gctggaccacctggtactgatggtcagcctggtgctaagggagaggctggagacactggt
gccaagggagatgctggtgctcctggacctgctggagcaacaggtgcacctggacctcag
ggccctgttggttctactggtcctaaaggtgcccgtggtcctgctggtcctccaggagct
actggtttccctggtgctgctggaagacttggacctcctggcccttctggtaatgctgga
ccacctggacctcctggagcccctggaaaggaaggtgcaaagggtcttcgtggtgagact
ggatctcctggtcgcactggtgagattggtgcttctggtcctcctggtacacctggtgag
aaaggaactcctggagctgagggtccccctggagctcctggtatacctggacctcatggt
cttgctggacagcgcggtattgttggtttccctggacagaaaggagagcgtggtttccct
ggtctcccaggaccatcgggagagcctggtaagcagggacctggtggcccctctggtgag
cgtggacctcctggacccatgggacccccaggactggctggacctccgggcgagcctggt
cgtgagggaactcctggtaatgagggttctgctggccgtgatggtgctgctggtcccaag
ggtgaccgtggtgagagtggtgctgctggtgctcctggtgctccaggacctccaggagct
cctggacctgttggccctgctggaaagactggtgatcgtggagagtctggtcctgccggt
cccgctggtgctgctggccctgctggcccccgtggccctgctggacccgctggagcccgt
ggagacaaaggtgagactggtgaggctggagaaaggggcatgaagggacatagaggattc
actggaatgcagggaccacctggacctcccggaccttctggagagtccggacctgccgga
gcttctggccctgctggacctagaggacctgttggagctgccggttcttctggtaaagat
ggcatgagtggacttcctggacccattggacctcctggacctcgtggtcgcactggtgaa
ataggaccagctggacctcctggacctcccggaccccctggacctcctggaccatccggt
ggtggattcgacattggcttcattgctgcaccccaggagaaagctcctgatcctttccgt
cactaccgtgctgatgatgccaatgtgatgcgtgaccgtgacctggaggttgataccacc
cttaagtccctgagccagcagattgagaatatccacagccccgatggcaccaagaagaac
cctgcccgcacctgccgtgacctgaagatgtgtcaccccgactggaagagcggtgagtac
tggattgaccctgaccagggctgcaaccaggatgccatcaaggtctactgcaacatggag
aatggtgagacctgcgtctacccatcacagtctgatgttcccaagaagagctggtacaca
agcaagaacatcaaggagaagaaacatgtctggtttggagaggctatgactgatggcttc
cagttcgagtatggcagtgagggctccaagcctgaggatgtcaacatccaacttaccttc
ctgcgccttatgtccactgaggcttcccagaacattacatatcactgcaagaacagcatt
gcctacatggatcaggccacaggcaaccttaagaaggctctgcttctgcagggctccaat
gagattgagatcagagcagaaggcaacagccgcttcacatacagcgtcactgaagatggc
tgcacgtcgcacactggtgcatggggcaagacagtcatcgactacaaaacaacgaaaaca
tctcggctgcccattattgacatcgctcctatggacgttggtgcacccgatcaggaattt
ggcattgaagttggcccagtctgcttcttgtaa
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integrated database retrieval system
