Ictalurus punctatus (channel catfish): 108279313
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Entry
108279313 CDS
T04658
Name
(RefSeq) 3'-5' exoribonuclease 1
KO
K18416
3'-5' exoribonuclease 1 [EC:3.1.-.-]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108279313
03036 Chromosome and associated proteins [BR:
ipu03036
]
108279313
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
108279313
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Gene silencing
RNA interference (RNAi) pathway
Other RNAi proteins
108279313
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
SAP
SAP_new25
Motif
Other DBs
NCBI-GeneID:
108279313
NCBI-ProteinID:
XP_017348954
Ensembl:
ENSIPUG00000004305
UniProt:
A0A2D0T214
LinkDB
All DBs
Position
18:complement(20444514..20451340)
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AA seq
333 aa
AA seq
DB search
MEEQSKKVLFKSEMTECGSEQRNSGESKSEQENGSCKETAPADFSDPVYKELSLANGTIN
RMNRDELRAKCAELKLDTRGVKDVLKKRLKNYYKKQKLKQSATAGSDGSYYDYICVVDFE
ATCEENNPRNFIHEIIEFPMVLIDMHTLEIVDSFQEYVKPQLNPKLSDFCVELTGITQKM
VDEADPFPRVLRRVVDWLQEKELGTKYKYTLLTDGSWDMSKFLHTQCRLSRLRYPQFARN
WINIRKSYGNYYKVARTQTRLNCMLENLGMRYEGRPHCGLDDSRNIARVAIRMLKDGCRL
RANERLYEGELQNVSSTVVLEGAPPPQYPKSRD
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atggaggaacagagtaaaaaagtcctttttaaatccgaaatgacggaatgtgggagcgag
cagaggaacagcggcgagtctaaatccgaacaggaaaacggctcgtgtaaagaaacggca
cctgcggatttcagtgatccggtgtataaagagctctctctggccaacggcaccattaac
cgcatgaacagagatgaactgcgtgctaaatgtgctgagctcaagctggacaccagaggt
gtgaaagacgtgctgaagaagcgtcttaagaactactataagaagcagaagctgaagcag
tcggcgacggccggctccgacggctcgtattacgactacatctgcgtggtggacttcgag
gcgacgtgtgaagagaataacccgcggaactttatccacgaaatcatcgagttccccatg
gtcctcatcgacatgcacactttggagattgtcgattcgtttcaggaatacgtgaagccc
cagttgaacccgaagctctcggatttctgcgtggagctaacaggaataacacagaaaatg
gtggacgaggcggatccgttccctcgcgttcttcgccgagtggtggactggctgcaggag
aaagagctgggcaccaagtacaaatacactctgctaacagacggatcttgggatatgagt
aaattccttcacacgcaatgccgactgagtcgactccgatatcctcagtttgcaagaaat
tggatcaacatcagaaagtcttatggaaactattataaggtggctcggacccagacgagg
ctgaactgcatgttggagaatctcggcatgcggtacgagggccgaccgcactgcggcctg
gacgactcacgcaacatcgcccgtgtcgccatccgcatgctgaaggacggctgtcggctg
cgcgcgaacgagcgtctgtacgaaggcgagctgcagaacgtgtccagcacagtggtgttg
gaaggagctccgcctcctcagtaccccaaaagcagagactga
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integrated database retrieval system