Ictalurus punctatus (channel catfish): 108279347
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Entry
108279347 CDS
T04658
Symbol
hmgb3b
Name
(RefSeq) high mobility group protein B3b
KO
K11296
high mobility group protein B3
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ipu03036
]
108279347 (hmgb3b)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ipu04147
]
108279347 (hmgb3b)
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
108279347 (hmgb3b)
Exosome [BR:
ipu04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
108279347 (hmgb3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box_2
HMG_box
HMG_WDHD1
YABBY
JmjC
Motif
Other DBs
NCBI-GeneID:
108279347
NCBI-ProteinID:
XP_017349019
Ensembl:
ENSIPUG00000019277
UniProt:
A0A2D0T277
LinkDB
All DBs
Position
18:complement(10824667..10828461)
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AA seq
202 aa
AA seq
DB search
MAKGDPAKPKGKMSAYAYFVKTCREEHNKKNPGVSVNFSEFSKKCSERWKVMSPKEKTKF
EELAKQDKARYDQEMMNYNPGKRGRKTKKDPSAPRRPPSGFFLFCSEHRPSIKAQNPSMG
IGDVAKKLGEMWNNLSDSEKQPFLSKANKLKDKYQKDMADYKSKGKVGGGVSAGKAKSRD
DDDDDDDDDDEEEEDEDDEEDD
NT seq
609 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaggtgatccagcaaagccgaagggcaaaatgtctgcttatgcctactttgtg
aagacttgtcgtgaggagcacaacaagaagaaccctggggtttctgtgaatttttcagag
ttctccaagaagtgttcagagagatggaaagttatgtctccaaaagaaaagaccaagttt
gaggagttggccaagcaggataaggctcgctatgaccaagaaatgatgaactacaatcca
ggcaaaaggggccgaaagactaagaaggatcccagtgcacctaggaggccaccgtccgga
tttttcctgttctgttctgaacacaggcccagtatcaaagctcagaatcctagcatgggc
atcggtgacgtggcaaagaagcttggcgagatgtggaacaatctgtccgactctgagaaa
caacccttcctttcaaaggccaataaactcaaggacaaataccagaaggacatggccgac
tacaagagcaaggggaaagtgggtggtggggtgtcagcaggcaaagcgaaatccagggat
gatgatgacgatgacgatgacgacgatgatgaagaggaggaggatgaagatgatgaggaa
gatgattaa
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