Ictalurus punctatus (channel catfish): 108279360
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Entry
108279360 CDS
T04658
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108279360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ipu03041
]
108279360
Enzymes [BR:
ipu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108279360
Spliceosome [BR:
ipu03041
]
Complex A
U2 snRNP components
U2 related factors
108279360
Complex B
108279360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
108279360
NCBI-ProteinID:
XP_017349054
Ensembl:
ENSIPUG00000002564
UniProt:
A0A2D0T2A8
LinkDB
All DBs
Position
18:complement(18689561..18703359)
Genome browser
AA seq
1049 aa
AA seq
DB search
MLAKQKQKRRETVVQFTDSMGRESRHYRKRSSSRGRSGSRSKSRSPDSKRVKKEDRARER
GRRERSRSRERRRSRSRDRKRQRRSRSRERKRSRSRERRRSRSRSKGRSKEKTDGGEQSA
DKKKKEEKEEERVEDQDFDQTTLEEEMRKRKERVEKWREEQRKKAMENIGEIKKELEEMK
QGKKWSLEDDDDDDEEGPASVDQEGEEDEEKEKDGKVEEAEVMEEEGGEELDPLDAYMEE
VKEEVKKFNMGTMKGGNDKKGGMTVTKVVTVVKTKKIPYITKKKGELMENDQDAMEYSSE
EEEVDLQTALTGFQTKQRKILEPVDHQKIQYESYRKNFYVEVPELAKMTPEEVNEYRLEL
EGILVKGKGCPKPVKTWVQCGTSMKVLNALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAK
TGSGKTIAFLLPMFRHILDQRPLEEGEGPIATIMTPTRELALQITKECKKFSKPLGLRVV
CVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANSGRVTNLRRVTYVVVDEADRMFDM
GFEPQVMRIVDNVRPDRQTVMFSATFPRVMEALARRILNKPIEVQVGGRSVVCSDVEQHV
IVIEEEKKFLKLLEILGHYQEKGSVIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYD
RDSIINDFKSGACRLMVATSVAARGLDVKHLILVVNYNCPNHYEDYVHRAGRTGRAGNKG
HAYTFITQDQVRYAGDIIKALELSGSSVPPELEQLWATFKEQQKAEGKSIKSSSGFSGKG
FKFDETEHALANERKKLQKAALGLHDSDDEDTALDIDEQIESMFNSKKRVKDLAAPGGSA
PSGSGLTVSAAGLGGLTAPSAGNIQKLEIAKKLALKINAQKNLGAEAQDVMQQATNAIMR
GGTMIAPSISAKTIAEQLAEKINAKLNYTPIEKLEEERQNAEQAESVKRYEEELEINDFP
QTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAK
AEITRLIKEELIRLQNSYQPTAKGRYKVL
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atgttggcgaagcagaaacaaaaacgtcgtgaaacagttgtacagtttacagacagtatg
ggacgggagtctcgacattaccggaagcgctcatcatcacgaggacgctcgggcagtcgc
tctaaaagccgctctcctgactctaagcgagtgaagaaagaggatcgagcacgtgagcgg
ggacgcagggaacgatcacgcagcagagagcggaggagatcacgctccagagaccgcaag
agacagaggcggtctcggagtcgtgagcgtaaacgctccagaagtcgtgagcgcaggagg
tcgaggagccgcagtaaagggcgaagcaaggagaagacagatggtggtgagcagtcagca
gataagaagaagaaagaggagaaggaagaggagcgagtggaggatcaggactttgaccag
acgacactggaggaggagatgaggaagaggaaggagcgggtagagaaatggagggaggag
cagaggaagaaggccatggagaacattggcgagatcaaaaaggagctcgaagagatgaaa
cagggcaagaagtggagcctggaggatgatgatgatgatgatgaagaaggtccggcctca
gtggatcaagagggagaggaggatgaggagaaggagaaggacgggaaggtggaggaagca
gaggtgatggaggaggagggaggggaagagcttgaccccctggatgcctacatggaggaa
gtgaaggaggaagtgaagaagttcaacatgggcactatgaagggaggaaacgacaaaaaa
ggaggcatgactgtgacaaaggtggtgacagtagtgaagacgaagaagattccttacatc
accaaaaagaaaggagagttaatggagaatgatcaggatgccatggagtattcgtcagag
gaggaggaagtggacctgcaaacggctctcaccggcttccagaccaaacagcggaaaatt
ctggagcctgttgatcatcagaaaatccagtacgaatcctaccgcaagaatttctacgta
gaagttcctgaactggccaaaatgacaccggaggaggtgaatgagtatcgtctggagctt
gagggaatcttggtgaaggggaaaggctgtcccaaacccgtaaagacctgggtgcagtgt
ggaacatccatgaaggtcttaaatgcccttaaaaagcataactacgagaagcctacgccc
atccaggctcaggccattcccgccatcatgtccggacgtgacctcatcggcattgccaaa
acaggaagtgggaaaaccattgcattcctgctgccaatgtttcgccatattttagaccaa
cgacccctagaggagggggaggggcctatcgcgacaatcatgacgccaacacgtgagctc
gctctgcagatcactaaagagtgtaaaaagttctccaagccactggggctcagagtggtg
tgtgtgtatggtggaacaggcatcagtgagcagatagcagagctgaagcgtggagctgaa
atcattgtctgcactcctggtcgaatgatcgacatgctgggagccaacagtggacgagtc
acgaacctgcgcagagtcacatatgtcgtagtcgatgaagctgatcgaatgtttgatatg
ggttttgaaccacaggtaatgcgcatagtggataatgtgcggccggatcgtcagacagtg
atgttttcagcaacatttcctcgagtgatggaggctttagctcgccgtatcctcaacaaa
ccaatcgaggttcaggttgggggaaggagtgtggtgtgttcagatgtggagcagcatgtg
attgtgattgaggaggagaagaagttcctgaagctgttggagattttgggtcattatcag
gagaaaggctcggtgattatttttgtagataaacaggaacacgcagacggcttgctgaaa
gacctgatgaaggcctcgtacccctgcatgtctctgcatggaggaatcgatcagtatgat
cgggatagtataataaacgattttaagagcggggcatgtcggctgatggtggccacatcg
gtggcagcgagaggcctggacgtaaagcatctcattctagtggtgaactacaactgtccc
aatcattatgaggactatgtccaccgtgccgggaggactggcagagctggaaataagggc
cacgcatacacgtttatcactcaggatcaggtgcgatatgcaggtgacatcattaaagct
ctggagttgtcagggtcttcagttcctcctgaactcgagcagctttgggctaccttcaag
gagcagcagaaagcggaggggaagagtattaagagcagcagtgggttttcagggaaaggc
tttaagtttgatgagactgaacatgctctggctaacgaaaggaagaaactccagaaagca
gcgcttggtcttcatgactcagacgacgaggacacagcactggatatagatgagcagatc
gaaagcatgtttaactctaagaagcgtgtgaaggacttggcggctccggggggttctgca
ccgtcaggttcaggactcactgtttctgctgcaggacttggtggtctcactgcaccttca
gctggaaacattcagaaacttgagatcgccaagaaactggcactaaagatcaacgcacag
aaaaacctcggcgcagaagctcaggacgtaatgcaacaggccactaacgccatcatgagg
ggtgggaccatgatcgcaccctccatctccgctaagaccattgccgagcagcttgcagag
aaaatcaatgccaagctgaactacacacccatcgagaaactggaggaggagcgacagaat
gctgaacaggcagagagtgtcaagaggtatgaagaggagctggagatcaacgactttccc
cagacggcgaggtggaaggtgacgtctaaagaggctctgcagaggattggtgaatattca
gaggctgccatcaccatcagagggacatacttccctcctgggaaagaacccaaagaggga
gaacgcaagatttacctcgccatcgagagtgcaaatgagttggcagtgcagaaagcaaaa
gcagaaatcacacggctcatcaaagaagagctcatacgcttgcaaaactcgtaccagccg
acagccaaaggccgatacaaagttctgtag
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