Ictalurus punctatus (channel catfish): 108279383
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Entry
108279383 CDS
T04658
Name
(RefSeq) UV excision repair protein RAD23 homolog B
KO
K10839
UV excision repair protein RAD23
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03420
Nucleotide excision repair
ipu04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
108279383
09124 Replication and repair
03420 Nucleotide excision repair
108279383
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
ipu03051
]
108279383
03400 DNA repair and recombination proteins [BR:
ipu03400
]
108279383
Proteasome [BR:
ipu03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
108279383
DNA repair and recombination proteins [BR:
ipu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
108279383
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
UBA_7
Rad60-SLD
Rad60-SLD_2
Crinkler
Dsc3_N
UBA_3
CUE
RAP1
Ubiquitin_5
Motif
Other DBs
NCBI-GeneID:
108279383
NCBI-ProteinID:
XP_017349100
Ensembl:
ENSIPUG00000002811
UniProt:
A0A2D0T3C6
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All DBs
Position
18:complement(18856437..18867434)
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AA seq
384 aa
AA seq
DB search
MQITLKTLQQQTFKIDIDAEETVKALKEKIENEKGKESFPVAGQKLIYAGKILNDDTALK
EYKIDEKNFVVVMVAKPKAATAAAQSSTTAASSSSSTSSTTTPTVPPVAASAATTTTTTT
TTTDSTSESSVIEEKAAEEKPPSSTPASSGSLTNVNIFEEATSALVTGQSYENMVTEIML
MGYEREQVVAALRASFNNPDRAVEYLLTGIPVESEGNVGASDPAAPVGGAPAVTTGLSSP
SSTTPTQPTAGSGANPLEFLRNQPQFLQMRQIIQQNPSLLPALLQQIGRENPQLLQQISS
HQEQFIQMLNEPAQEAGQGGGGGVSEAGGGHMNYIQVTPQEKEAIERLKALGFPEGLVIQ
AYFACEKNENLAANFLLQQNFDDD
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
atgcagatcacactgaaaaccctgcagcagcagacgtttaagatcgacatcgacgcggag
gagacggtaaaggcgttaaaggagaaaattgagaatgagaaagggaaggagagttttcct
gtcgctggacagaagttgatctatgcaggtaaaatcctaaacgatgacaccgcactgaag
gagtataagatagatgagaagaactttgtggttgtcatggtagcaaagcctaaagctgct
actgcagccgctcaatcttcaactactgcagcatcatcgagtagttccacctctagcact
acaacgcccacagtcccccctgttgctgcctctgccgccaccaccaccaccaccaccacc
accaccactgattccacatccgaaagcagtgtcatagaggagaaagcagcagaggaaaaa
ccaccatcttctacacctgccagttctggtagtctgacgaacgtcaacatattcgaggag
gcgacttctgctctggtgacaggacagtcgtatgagaacatggtgactgagatcatgtta
atgggctatgagagagagcaagtggtggcagcgctgcgtgccagtttcaacaacccagac
cgagctgttgagtacctgctcacgggaattccagtggagagtgaggggaacgtgggggcc
tctgatcctgcagctccagtagggggagcaccggctgttaccacaggactctcatcacca
tccagcacaacacctacacagcccactgctggatcaggagctaatcctctggagtttctg
aggaatcagcctcagttcctgcagatgaggcagatcatccaacagaacccctcactgctg
cctgctctactgcaacagatcggccgagagaacccccagctactgcagcaaatcagcagt
caccaggagcagtttattcagatgctgaatgaaccggcacaggaagcagggcaaggaggg
ggagggggcgtgtctgaggctggtggtgggcacatgaactacatacaggtcacaccccag
gaaaaggaagcaattgagaggctaaaggcacttggattcccagaaggacttgttattcaa
gcctacttcgcttgtgagaagaacgagaatctggctgccaatttccttttacaacagaac
ttcgatgatgactaa
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