Ictalurus punctatus (channel catfish): 108279733
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Entry
108279733 CDS
T04658
Name
(RefSeq) pseudouridylate synthase PUS7L isoform X1
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ipu03016
]
108279733
Enzymes [BR:
ipu01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
108279733
Transfer RNA biogenesis [BR:
ipu03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
108279733
Prokaryotic type
108279733
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
R3H_PUS7L
PUS7L_N
Motif
Other DBs
NCBI-GeneID:
108279733
NCBI-ProteinID:
XP_017349650
Ensembl:
ENSIPUG00000014589
UniProt:
A0A2D0T4W4
LinkDB
All DBs
Position
19:complement(3857444..3861829)
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AA seq
675 aa
AA seq
DB search
MEGGTPSLACRSAHQGFHGSIKNSTQDFVVTEIDVHGQLVNSPGAPEEPVTFKSNEFPQK
DNIRVNLLTEETPSDEVPSNAVSLDGGEVLSQECFDLSVILSSSVKKTLEQFASVVQGCT
EVQKNLEISLGAFPDKQQRAIVHSALKYNYPFLMTVTDHDEILVREDPDFRELSHLVSVE
EAEDFFRFKDAKVPGSTFTFVPDDIKEHRTSVHHFVSRKFGKLMETKSFATRGRTAITVR
LRERGRQARKRTAAERADEQDLYTGFTLRKENLETLEAISYMAAMLGVLPSDFSYAGIKD
KRAVTYQSMVVKKVSPERLLEKTCVFERKGLQLSKIHPVSEPLRLGRLAGNHFDLVIRDV
KPHKCSSIDLESLVEEAVENVKCVNTLSSMTILQTWGFVNYYGPQRFGSSQKVQADQVGL
ELLKDDMNTALRLFLSPEEGDDLENKAKQHFHQTGNAKESLALMPPHKARERLMLRALHR
YGSGPDGCTHAWLSLPHSMRVFYLHAYCSRLWNEAACFRLRTLGPRPVQGDLVLAAACRD
SQAEEETPASQVHVVTTAEEHDGVFSLDQVVLPMPGNSVKYPENALGSWYQERLGQDGLG
SCRFRIPSLKLNVPGCYRPLLSYPRNVSYNLHVDEDTQDTGLSAPPCRTTLALAFNLNAS
CYATVCLREIMKCDP
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggagggagggacaccatcactggcctgcagatctgctcatcaaggctttcatggcagc
atcaagaactccacccaggactttgtagtcactgagatagatgtgcatgggcagcttgtg
aacagtccaggtgctcctgaggaacctgtgacattcaagagcaatgagtttccacagaag
gacaatatcagagtaaacctcctgactgaggaaacaccttctgatgaagtcccaagcaat
gctgtcagcttagatggtggtgaagttttgagccaggagtgtttcgacctgagtgtcatt
ctaagcagttctgtaaagaagactttagaacaatttgccagcgttgtccaaggttgcact
gaagttcagaagaacctggaaatctccctcggagcctttccagacaagcagcagcgagcc
atcgtgcacagcgcgctgaagtacaattacccgtttctcatgaccgtcaccgaccacgac
gagatcctggtcagagaggacccagactttagagaactgtcgcatttagtctctgtggag
gaagcggaggatttcttcaggtttaaagatgctaaagttcctggctccacgttcaccttt
gtgccggatgacatcaaggagcaccggacgtctgttcaccatttcgtgagcagaaagttt
ggaaagctgatggagacgaagagctttgcgacgcggggcagaactgctattacagtgagg
ctgagggagcgagggcgacaggccaggaagaggacggcagccgagcgggcggatgagcag
gatctctacacaggtttcaccctacgaaaagaaaatcttgagactttagaggctatcagc
tatatggcagcaatgcttggagttcttccatctgacttctcctacgctggcatcaaagac
aaacgagccgtaacctatcagtcgatggtcgtgaagaaggtttctccagaacggttgttg
gaaaagacctgtgtgtttgagaggaaaggactgcaactgtctaaaatccatccagtatcc
gaaccccttcggcttggaaggctagcaggcaaccattttgaccttgtcatccgggacgtg
aagcctcacaagtgtagttcaatcgatctagaaagtcttgtggaagaggctgtggagaac
gtgaagtgtgtgaatacattaagttcaatgaccatcttgcagacttggggctttgtgaat
tattacggaccgcagaggtttggaagtagccagaaagttcaagcagaccaggtgggactt
gagcttctgaaggacgacatgaatacagctctcaggttgtttctgagcccagaggaaggt
gacgacctggaaaacaaagccaagcaacatttccatcagacagggaatgcaaaagaaagc
ctggctctcatgcctccgcataaggccagagagaggctgatgctacgagctctgcaccgc
tacggcagcggccccgatggttgcactcacgcttggctcagcctgccgcatagcatgagg
gtcttttacctccacgcctactgtagtcgtttgtggaacgaagcggcgtgcttcaggctg
cggactctaggacctcggcctgtacagggagacctggtcctagccgcggcctgcagagat
agccaagccgaagaagaaacgcctgcgtcacaggtccacgttgtcaccactgcagaagag
catgacggcgtcttttcactagatcaggtggtcctcccaatgccaggcaacagtgtgaag
tacccagagaatgcgctcggctcctggtatcaggaaagactgggacaggacggactcggc
tcatgtcgattcagaatcccctcacttaaactcaacgtcccgggttgctatcgcccccta
ctgtcttaccctcgtaatgtctcctataacctacacgttgatgaggacacacaggacacg
gggttgtccgcacctccgtgcagaactaccctggctctggcttttaacttgaatgcgtcc
tgttatgcgacagtctgtctccgagaaatcatgaagtgtgacccgtag
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