Ictalurus punctatus (channel catfish): 108279796
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Entry
108279796 CDS
T04658
Name
(RefSeq) DNA-(apurinic or apyrimidinic site) endonuclease
KO
K10771
AP endonuclease 1 [EC:
3.1.11.2
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
108279796
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ipu03400
]
108279796
Enzymes [BR:
ipu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
108279796
DNA repair and recombination proteins [BR:
ipu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
108279796
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Motif
Other DBs
NCBI-GeneID:
108279796
NCBI-ProteinID:
XP_017349773
Ensembl:
ENSIPUG00000005799
UniProt:
A0A2D0T4E3
LinkDB
All DBs
Position
19:complement(9128471..9133406)
Genome browser
AA seq
311 aa
AA seq
DB search
MPKRAKKNEASAEAGNDNGTEPETKKGKKAKEPEAPVLYEDPPDKLTSKSGRAANMKLTS
WNVDGLRAWVKKKGLDWVRQESPDVLCLQETKCAEKALPADITSMPEYPYKYWSGSEDKE
GYSGVAMLCKTEPLDVTYGIGKEEHDKEGRVITAEFPSFFLVTAYVPNAGRGLVRLDYRK
TWDVDFREYLSDLDSRKPLVLCGDLNVAHQEIDLKNPKGNRKNAGFTPEEREGFSQLLAA
GFTDSFRELYPEQTNAYTFWTYMMNARGKNVGWRLDYFLLSAALLPSLCDSKIRNTAMGS
DHCPITLHLAI
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atgccgaagagagccaagaaaaacgaggcttctgcagaagcaggaaacgacaacggaaca
gaaccagaaacaaagaaagggaagaaggcaaaggaacccgaagccccagtgttatatgaa
gatcccccagataagctgaccagcaagagtggccgggcagccaacatgaagttaacctcg
tggaacgtagatggccttcgtgcgtgggttaagaagaaagggcttgattgggtgcgtcag
gagtctccagatgtgctttgtcttcaggagacgaagtgtgctgagaaagctttaccagca
gatatcacatctatgcctgagtatccatataagtactggtcaggctcagaagataaagag
ggttacagtggagtggccatgctgtgcaagactgagcctcttgatgtcacttacggaatt
ggaaaagaggagcatgacaaagagggccgcgtgataactgccgagttcccttccttcttt
ctggttaccgcatacgtgcccaacgctgggcgcggtctggttcgcctcgactaccgtaaa
acgtgggatgtagatttccgcgaatacctgagcgacctggacagtcgcaagcccctggtg
ctgtgtggtgacctcaacgtggcccaccaggagattgacctgaagaaccccaaaggcaac
cgtaagaatgcaggcttcactcctgaagagcgcgaaggtttcagccagctcctggccgct
ggctttaccgatagcttccgtgagctgtatccggagcagaccaacgcctacaccttctgg
acgtacatgatgaatgcacggggcaagaacgtgggctggcgcctggactacttcctgctc
tcggctgctttgctcccaagcttgtgcgacagcaagattcgtaacacggccatggggagt
gaccactgccccatcaccctccatctggctatataa
DBGET
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