Ictalurus punctatus (channel catfish): 108279882
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Entry
108279882 CDS
T04658
Name
(RefSeq) probable helicase with zinc finger domain
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108279882
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
108279882
3'-5' decay
Other 3'-5' decay factors
108279882
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_19
zf-CCCH
AAA_30
UvrD-helicase
ResIII
PAM2
zf_CCCH_4
Mov-10_helical
Zn_finger_prot
AAA_22
PhoH
AAA_16
zf-CCCH_4
MOV-10_Ig-like
ZIP4_domain
AAA_7
Motif
Other DBs
NCBI-GeneID:
108279882
NCBI-ProteinID:
XP_017349967
Ensembl:
ENSIPUG00000003010
UniProt:
A0A2D0T4X0
LinkDB
All DBs
Position
2:complement(29086966..29140231)
Genome browser
AA seq
1885 aa
AA seq
DB search
MEDRRPQKSCEEAIGSLVRQEYEAAVAHSTEALLALGSTPPTPNTTLLRKCALLYRIAAL
LQLKEYDQADEDCKHVLAEELGKGEGIFRAGLHKMMLDGSLQEVFTILSKALYGEPLNGI
MAKDMTRLKILLSEMEALSSKMATEQPGETEEDIQEGWQFRPPPRGVTSSEEYTLCKRFL
EQGLCRYGAQCTSAHSQEELTEWQQRYASRLIRLKQQQDGKHYTENYTETLIEKWINSLT
PEKVLNDCVDGVTLEHNSDLSVTVNTKKSSHSWTFSLYCQPARMLHRIALLYDANRPHFS
ITAVSAGDASTQVPQQVCEGGCQEWTGVGLLQNGMDHCLYTVEVAFRTEIFGTFRQTVVF
DFGSEPVLMQRVMVDAASIEDLEHLMQARQQLLMTAKRWDSSCKTIVEFVPNEYMELERS
LLTRYQIPLSADQLFTQSVLDKTLTRENYQSRLHDLLYIEEIAQYKEVSKFNIKVNLQMV
SSFMLTGISGGAKYAQNGQLFARFKLTETLSEDTLAGRLVMTKVNSVLLLPVSRDRAAHG
QHAGARERVYEALIEEKTKDYIFLRICKDCCEELNLMPDRELQVELQFQLNRLPLCEMHY
ALDRLRDNSILFPDTSLTPIIPWSPNRQWDEQLDPRLNAKQKEAILAITTPLSINLPPVL
IIGPYGTGKTFTLAQAVKHILKQPDTRVLICTHSNSAADLYIKDYLHPYVEAGNPHARPL
RVYFRNRWVKTVHAVVQQYCLISGAYLTFQMPTRQDIERHRVVVVTLSTSQYLCQLDLEP
GLFTHMLLDEAAQAMECETIMPLALANKSTRIVLAGDHMQLSPFVYSEFARERNLHVSLL
DRLYEHYPSEYPCRILLCENYRSHDAIINYTSDLFYEGKLMASGKQPQHKDFYPLTFFTA
RGEDVQEKNSTAYYNNAEVFEIVERVEEMRRKWPVAWGKLDEGSIGVVSPYADQVFRIRA
ELRKKRMHDVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTAIKRKEQLVEDSTEDLDY
GFLSNYKLLNTAITRAQSLVAVVGDPIALCSVGRCRKFWETFISICHDNGSLHGITFEQI
KAQLEALELKKTYVLNPLAPEFIPRALRAQQPQGPGKHQHSPPKVKGQLANHAEHFPPEG
FVQPSAAVLMGNPIQAFTPTGGGAPPSGKSPSPVQRIDPHTGASILYVPAVYGGNMVMPM
SLPLPWPGYQNRFAMDPRIMSHQAAMAAYNLNLRPAVSRASPVLYGLNQPSPLGIGQLPA
TDKDLLQEPTANGKVDINGKLEHSRLLTPERKASELKEKQGEPEPGQNKSPETHAGLVFP
SSRLLRKDPPAQRPPLGFPLPPPHPAFAPHAPPGSLAHYGLPRPPLRVQTQQPQPSAFPP
SFFSGHPLAQRTLHSPGLDGLDGGESLMGTVPDELKNVVRGMPPQHQPHQQPMRLNSFGE
ESLDSLLGESLDGQSCSGMETMAPQPQQQQPVRLGQWNEPGPFLQGTVPPFTLAQQLAHL
GQPGMRIPQQLLRANWGLGTAAEDDPRAPMPRYPGLPRESLPQESYEPREAAEMPPPQSR
LLQYRQVQQPHIPGELPSPSTASSALPSSTSSSSNTHNHTPAPGPFPYPETSRELPFHQQ
QAFSQAALPIPPEHVPIKYLLPEAHWHHAGTQQSQTLAFGLQQGPFTQLQLQQHKQQQQQ
QQQQLQAPHNALHSLEEYEPRGPGRPLYQRRISSSSPQPYGESVVQCKESQDPTACFTYP
PADLWPSPGPAPLHNIPCNGASHLVPQRDILVSKAVNAAEEHVQAECVQQPPHSAGLAAL
QQHGQFPALLPSKQTPPDPGGVGSMQASGHNKPPAMSYASALRAPPKPRCPLPEQTKKNS
DPISLLQDLSIGSSNSSNGYYSYFK
NT seq
5658 nt
NT seq
+upstream
nt +downstream
nt
atggaggacaggaggccccagaagtcatgtgaagaggccattggatcattagtaaggcag
gagtatgaggcagcggtggcccacagcacggaggccctgctggcactgggctcgacccca
cccacccccaacacaaccctcctccgcaagtgtgcactcctctaccgcatagcagccctg
ctccagctgaaggagtatgatcaagctgatgaagactgtaagcatgtgctggctgaggag
ctgggtaagggtgagggaattttcagggccggactgcataaaatgatgctggatggaagc
ctacaggaagtcttcaccattctttctaaagctctgtatggagaaccgctgaatggaatc
atggctaaggatatgacgaggttgaagatactcctgtcggagatggaggctttaagcagt
aaaatggcgactgagcagccaggagaaacagaggaggacattcaagaaggttggcagttt
cggcctcctcctcgaggggtcactagcagcgaggagtacacattgtgtaaaaggtttcta
gagcagggtctgtgtcggtacggtgcacagtgcacctcagcccactcacaggaggagctg
accgagtggcagcagcgctatgcctccagactgatccgtctcaaacagcagcaagatggg
aagcattacacggagaactacacggagaccctcattgagaagtggatcaactcccttaca
ccagagaaagtgcttaatgactgtgtagacggagttacattggaacataactcagatctt
tcagtcactgtcaacaccaagaagtcatcccattcctggacattctcactttactgccag
cctgcccgcatgttgcaccgcatcgccctactctacgatgccaaccgaccacacttctcc
atcacagccgtgtcagcaggagacgcctctacccaggtaccccagcaggtgtgtgagggc
ggctgtcaggagtggactggagtaggactgctgcagaatggcatggatcactgcctctac
accgtggaggtggcgtttagaaccgagatctttggcactttccgccagaccgtagtcttc
gatttcggctctgagcctgtgctgatgcagagagtgatggtggacgcagcgtctattgaa
gacctggagcatttgatgcaggcaaggcagcagctcctgatgacagcgaagcgctgggac
tcctcctgcaagaccattgtggagtttgttcccaacgagtacatggagctggagcgcagt
ctgctcacccgctatcagatcccactgtccgctgaccagctcttcacccagtccgttttg
gacaagactctcacacgtgagaactaccagtcccgcctgcatgatctgctctacatcgag
gagattgcccagtacaaggaagttagcaagttcaacatcaaggtaaacctgcaaatggtc
tccagcttcatgctgactggaatatccgggggtgctaaatatgcccaaaacggccagctg
tttgcccgatttaaactaacagagacactgtctgaggacacattggcaggacggctggtg
atgacgaaggtgaactcggtgcttctgttgcccgtgagccgggatcgggcagctcatggc
cagcatgccggtgccagggagcgtgtctatgaggcccttatagaggagaagactaaggac
tacatcttcctgcgtatctgtaaggactgctgtgaggagctcaatctgatgcctgaccgg
gagctgcaggtggagctgcagtttcagctcaacaggcttccactgtgtgagatgcactat
gctctagaccgcctccgtgacaacagcatcctctttcctgacaccagcctaactcctata
atcccctggagccccaacaggcagtgggacgagcagttggaccctcgtttaaacgccaag
cagaaggaggccattttggccatcaccactccactgtcaatcaatctccctcctgtgctt
atcattgggccctacgggacaggcaaaactttcaccttggctcaggcagtgaaacacatc
ctcaaacagcctgacacacgggtcctcatctgcacccattcaaacagtgcagcagatctg
tacataaaggactaccttcatccatatgtggaggctggcaatccacacgcaagacctctc
agggtttactttaggaaccgctgggtaaaaacagtgcacgcagtcgtgcagcagtattgc
ctgatctctggagcttacctcaccttccagatgcccactcggcaggacatagagcgccac
cgtgttgtggtagtgacgctcagtacctcccagtacctttgtcagcttgatctggaacct
gggctcttcacacacatgttgttggacgaggcggcccaggcaatggagtgcgagaccatt
atgccgttggcactggctaataagagcacacgcatcgtgcttgctggagaccatatgcag
ctcagtccgtttgtgtacagtgagtttgcacgggagaggaacctacacgtgtccctgctg
gaccggctgtatgagcattatccttccgagtacccttgcaggatcctgctgtgtgaaaac
taccgctcccatgatgcaatcatcaattacacatcggacctgttctacgagggcaagctg
atggccagcggcaagcagccccagcataaggacttctacccactgaccttcttcacagct
cgcggggaggacgtgcaggagaagaacagcacggcttactacaacaatgctgaggtgttc
gagattgtcgagcgtgtagaggaaatgagaaggaagtggccagtagcgtggggaaagctg
gacgaaggcagcatcggcgtggtgtctccctacgcagaccaggtgtttcgaatccgagcc
gagctccgcaagaaacgcatgcacgacgtcagcgtggagcgagtgctcaacgtccagggt
aagcagttccgtgtgctgttcctgagcacagttcgcactcgccacacctgtaagcacaag
cagacggccatcaagaggaaggaacagctggtggaagactccaccgaggacctggactac
ggcttcctctccaactacaaactcctgaacactgccatcacacgggcccagtcccttgtg
gccgtggtgggagaccccatagcgctctgctccgtgggccgctgcagaaagttctgggaa
acgttcatctccatctgccatgataacggcagtctgcatgggatcacattcgagcagatc
aaggcccagctggaggctctggagctaaagaagacctacgtgctgaacccactggctccc
gagttcatcccccgagccctaagagcccagcagccccagggacccggcaaacaccagcac
tccccacctaaggtgaaaggacagcttgccaatcatgcagagcactttcctcctgaagga
tttgttcagcccagcgctgctgtgttaatggggaatcccatccaggctttcactccaacg
ggaggaggagccccaccctctggcaaatcccccagtcctgtacagcgcattgaccctcac
actggagccagcatcctttatgtgcccgctgtctatgggggcaacatggtcatgcctatg
tctcttccattgccatggccaggctatcagaaccgctttgccatggaccctcgcatcatg
agccaccaggcagccatggcagcctataacctgaacctacggcccgccgtcagtcgggca
tcaccagtgctttatggtctgaaccagccatccccgctaggcattggccaactgccagcc
actgacaaggacctgctgcaggaacctactgccaatggaaaggttgatattaatggaaaa
ctcgaacatagcaggctgctgacacctgaaaggaaagcttctgagctgaaggagaaacag
ggagaacccgagccgggtcagaacaaaagccccgaaacccacgccggcctggtgtttccc
tctagccgtcttctacgtaaagacccacctgctcagcgtccgccactcggcttcccttta
ccccctcctcacccagcatttgccccccatgcccctccaggctccctggcacattatggc
cttcccagacctcccctacgtgtgcagacccaacagccacagccgtctgccttccctccc
tcatttttcagcggacatcctctggcccagcgcaccctgcactctccggggctggacggc
cttgacggaggggagagcctgatgggcactgtgcctgatgaattgaagaacgttgtgaga
ggaatgcctccccagcaccaaccccatcagcagccaatgcgcctcaacagctttggggag
gagagtctcgactcgctgcttggcgaatcgctggatggtcaaagctgttctggcatggag
acgatggctcctcaaccacagcagcagcagccggtgcgtctaggccagtggaatgagcca
gggcccttcttgcaagggactgtgcctcctttcaccctggcccagcagttggcacaccta
ggtcagccaggcatgcggatcccccagcaactgcttcgtgccaactggggcctgggcacc
gctgctgaggatgatccccgagcacccatgcccaggtatcccggtctcccacgtgagtca
ctcccgcaggagtcgtacgagccacgtgaagctgctgaaatgccccctcctcagtcacgc
ctgctacagtaccggcaggtacagcagccccacattcctggagagctgccctcaccttct
actgcctcttctgccctcccgtcatccacctccagcagttccaacactcacaatcatact
ccggccccggggcctttcccttacccagagaccagtcgtgagctcccttttcaccagcag
caggccttcagccaggccgccctccctataccccctgagcacgtgcccatcaagtacctt
ctgcctgaggctcactggcatcatgccgggacacagcagtcacagacgctggcatttggc
ctgcagcagggccccttcacacagcttcagcttcaacagcacaaacagcaacagcagcag
cagcagcagcagctccaggcccctcacaacgccctgcacagtctagaagagtatgaacca
agagggcccgggcggcccctgtaccagaggcggatatcctccagctctcctcagccatac
ggggagagtgtggtgcagtgtaaggagtctcaggatcccacagcctgtttcacatacccc
cctgcagacctgtggcccagcccaggccccgctccactccacaacattccatgcaatgga
gcgagtcacctcgtccctcagagggatattttagtatctaaggcggtgaatgctgcagag
gaacacgtccaggctgagtgtgtgcagcagcctcctcactccgctggccttgcagcgctt
cagcagcatggacagtttcctgcccttcttcccagcaagcagacccccccagacccggga
ggagtgggctccatgcaagcctcaggccacaacaaaccccctgccatgtcctacgccagc
gccctccgagctccccccaagccccgctgcccgctgcctgagcagaccaaaaagaacagc
gaccccatctctctgttacaagaccttagcatagggagttccaatagtagcaatggctat
tactcgtattttaagtaa
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integrated database retrieval system
