Ictalurus punctatus (channel catfish): 108279924
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Entry
108279924 CDS
T04658
Name
(RefSeq) nuclear pore complex protein Nup50 isoform X1
KO
K14295
nuclear pore complex protein Nup50
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108279924
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108279924
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
108279924
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUP50
Ran_BP1
Motif
Other DBs
NCBI-GeneID:
108279924
NCBI-ProteinID:
XP_017350059
Ensembl:
ENSIPUG00000011655
UniProt:
A0A2D0T605
LinkDB
All DBs
Position
19:14488437..14501604
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AA seq
466 aa
AA seq
DB search
MAKRIAEKELTDRNWDQEDEGEEAGTFSVASEEVMKNRAIKKAKRRNLGADGENGGAFKS
FKGFSLTPSAPAAGGAFSTFGNGAGFKHLSFLTNGSAASVTPTFGGFNTPATAKSNPGIS
SSNGPASSSSSIESGDIMPNGSTPSLPAISGGGSSSKEYNRQLTALNCSVRDWITKHVND
NPLCDLNPIFRDYERHLATIESKYGSGAVAGGEQQPGKQANTTTSTLSSSSSGSNVSPAI
PALFSFTKNKDSAAPEKSSVPADATFNFGQKVDSLVLSSLKSAGASGFSFSSTSTSSSTT
SLFGAASTGTSTGTFSFTAAKNDAASNNQPAGENGADEESEEPPVPIVKEIKEKDAFYSK
KCKLFYKKESEFKEKGVGTLHLKLVSEGKLQLLVRADTNLGNILLNIMVHASMPCTRTGK
NNVMVVCVPNPPVDDKNPSTPVPMLIRVKTAEDADELHKLLQEKKA
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagcggattgctgagaaagagctcactgataggaactgggatcaggaagatgaa
ggagaagaggcaggaacgttttcagttgcaagtgaggaagtgatgaaaaaccgggccatt
aagaaagccaagcgtcgaaatcttggagcagatggagagaatggaggagcttttaaaagc
tttaagggtttctctctgaccccgtcggctccagcggctggaggagctttctccacattt
ggaaacggggctggatttaaacacctctcttttttgaccaacggcagcgctgcatctgtc
accccaacttttgggggtttcaacacccctgccactgccaagtccaaccccggcatctca
tcatccaatggcccagcctcctcctcctcctccatagagagtggtgacatcatgcccaac
ggctccacccccagcctacccgcaatctctggaggaggcagcagcagtaaggagtacaac
cggcagctcacagctctcaattgctctgtgcgtgactggatcaccaagcatgtgaatgac
aacccgctgtgcgacctcaaccccatctttcgcgactatgagcgacacctggccaccatt
gagagcaagtacggcagtggcgcagtagcagggggggagcagcagccagggaaacaggca
aacaccaccaccagcacgctatcatcctcctcctccggcagtaatgtctcaccagccatt
cctgctttgttctccttcaccaagaacaaggacagtgctgctcctgagaaaagctccgtt
cctgcagatgctactttcaactttggccagaaggtggacagcttggtgctgagctccctt
aagtccgcaggggcttccgggttttcgttttcttccacctccacctcgtcctccaccacg
tctctgttcggtgcagctagcaccggcacttctacaggcaccttctctttcactgcggcc
aagaatgatgcagccagcaacaaccagccagcaggtgagaatggagccgatgaagaatcg
gaggagccaccagtacccatagtcaaagaaatcaaggagaaagatgccttctactctaaa
aagtgcaaactgttttataaaaaggaaagcgaattcaaggagaaaggagttggtaccctg
catttgaaactggtttcagagggcaagctgcagctcctggtgcgcgcggacacaaacctg
ggtaacatcctgttgaatatcatggttcatgcctccatgccgtgcacacggacagggaaa
aacaacgtcatggtggtgtgtgtgccaaatcccccagtggacgacaagaaccccagcacc
cctgtaccaatgctgatccgtgttaaaacagcagaggacgctgatgaactacacaaactt
ctgcaggagaagaaagcgtga
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