Ictalurus punctatus (channel catfish): 108280079
Help
Entry
108280079 CDS
T04658
Name
(RefSeq) CCR4-NOT transcription complex subunit 2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108280079
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108280079
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108280079
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108280079
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
108280079
NCBI-ProteinID:
XP_017350336
Ensembl:
ENSIPUG00000016424
UniProt:
A0A2D0T682
LinkDB
All DBs
Position
19:6634243..6656076
Genome browser
AA seq
521 aa
AA seq
DB search
MFSATRKKFMEGLDNDYPDDSVYYGQSSIFTHRSEKDMLALSSPSSGQLSQLGASLYGSQ
SALGFPMRGMSNNNTQLSRNLAQSMPLPSHGTPTTSVLTMSLHTPSSPSRGILPMNTRNM
MNHSQVGQSISMSGRSNSMSSSGLGSPNRISPSIICMPKQQQARQSLTINSMSGFGMGRN
PAFGLSNSFSSSIFNGMDGNENVTGLDLSDFPALADRSQREGSGNPTPLLNPLAGRAPYV
GMVTKPTHEQSQDFSIHNEDFPALPGPNYKDPTCSIDDSKSNLNLSGKNACNTDGPKFPG
DKILTPQNNNHQKKGIQVLPDGRVTNIPSGMVTDQFGMIGLLTFIRAAETDLGMVHLALG
SDLTTLGLNLNSPENLYPKFASPWASTPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLSRY
GEDLLFYLYYMNGGDLLQLLAAIELFNRDWRYHKEERVWITRAPGMEPAMKTNTYERGTY
YFFDCLNWRKVAKEFHLEYDKLEERPHVPSTVNYNPAQQAF
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgtttagtgccacgagaaagaagtttatggagggacttgataatgactacccagatgac
agcgtgtactatggccagtcatcgattttcacacatcgatctgagaaagacatgctggca
ttgtcgtctccatcatcgggtcagctgtctcagctgggtgcaagtttatatggctcgcaa
agtgcactgggcttcccgatgagggggatgagcaacaacaacacacaactcagtcgcaac
ttagcacaaagcatgccattacctagtcatggcacacccaccaccagtgtcctgacaatg
tccctccatactccatcctcaccgagtagggggattttgccgatgaacacgaggaatatg
atgaatcattcgcaggtggggcagagcatatcgatgagtggacggagtaacagcatgagc
agctcaggcctgggcagcccgaaccgtatctcacccagcatcatctgcatgcccaaacag
cagcaggccaggcagtcgctcaccatcaacagtatgtccgggtttggaatgggacgaaat
cctgcgtttggtttaagcaattcattttcaagtagcatttttaacggaatggatggaaat
gaaaacgtgactgggctggacctgtccgattttcctgccttagctgataggagtcaaagg
gaaggaagtggaaatccgaccccactgctcaacccactggctgggagagctccatatgtt
ggaatggtcacaaagccgacacacgagcagtcccaagacttctccatccacaatgaggac
tttcctgcacttcctggacccaactataaggatcccacatgtagtatcgatgatagcaaa
tcgaacttaaacttgtctggtaaaaacgcgtgtaacacagatggtcccaagtttcctggg
gacaaaatcttgacaccacagaacaacaatcatcaaaagaaaggaattcaggtgctacct
gatggccgagtgacgaacattccatctgggatggtgacggatcagtttgggatgattggt
ctgttaacgtttattcgggcagcagagacagacctgggtatggtgcacttagcgctgggc
agcgacctgacgacgctcggcctcaaccttaactcaccagaaaacctttatcccaagttt
gcctctccttgggcctccacaccttgtcggcctcaagatatcgactttcacgttccgtca
gaatatttaaccaacattcacataagagacaagcttgctgcaataaaactctcacgatat
ggagaggacctgctcttctacctttactacatgaatgggggagacctgttgcagctctta
gcagcaatagagcttttcaatcgggactggaggtatcataaagaggagagggtgtggatc
actcgagcaccaggaatggaacctgcgatgaagaccaacacctacgaaagagggacgtac
tacttctttgactgccttaactggagaaaagtagccaaggaatttcacctagagtatgac
aaacttgaagagcggccacacgtcccgtccactgtcaactacaacccggcccagcaggcc
ttctga
DBGET
integrated database retrieval system
