Ictalurus punctatus (channel catfish): 108280165
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Entry
108280165 CDS
T04658
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 3
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108280165
Membrane trafficking [BR:
ipu04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
108280165
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Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
LRR_1
I-set
Ig_3
ig
LRR_14
LRR_EndoS
Ig_2
LRR_LRWD1
LRR_9
LRRNT
V-set
LRR_RPS2
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
108280165
NCBI-ProteinID:
XP_017350457
Ensembl:
ENSIPUG00000019097
LinkDB
All DBs
Position
20:19441517..19496019
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AA seq
604 aa
AA seq
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MAALWGLGWLGVSLTLLALAPVCQSCPPRCECAAQLRSVSCQRKRLSGVPEGIPTETRLL
DLSRNRLRWVSPGDLAPYPRLEEVDLSENLISTLEPNAFASLQALRTLHLRGNQLKLVPM
GAFARLSNLTTLDLSENKIVILLDYTFQDLHSLKHLEVGDNDLVYISHKAFSGLLGLEDL
TIERCNLTSISGQTLSYLRNLVTLRLRHLSISTIEDQNFRKMSALRGLEIDNWPYLEYIS
PLSFQGLNLTWLSITNTNITAVPSASFRNLVYLTSLNLSYNPISVLEPWAFKDLIRLKEL
HMVSTNLQAVEPHALGGLRQIRVLNLSNNELVTLEDSSFHSVNSLETLRVDGNPLACDCR
LLWILQRRRTLNFDGKMPICAAPPEVQGNILSSFPDSALFDYFTCQKPKIRNRKLQQVTA
REGQLVSFLCRADGEPPPAIIWISPQRRKITSKSSSRITVLPSGTLEIRYAQVTDSGTYI
CIASNAGGNDTYFATLTVKGQPVDPAMFANRSLYAVDFNDTGLNSTRVFLKFTLDLTTIL
VSTAMGCITFLGVVLFCFLLLFVWSRGRGQRRNNFTVEYSFRKTEGPTTSSTSGGTRKFN
MKMI
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atggctgccctatggggcctgggctggctgggtgtgagcctcaccctgttggccctcgcc
ccagtgtgccagagctgcccgccacgctgtgaatgtgcggctcagctccgctccgtgtcc
tgccagcgaaagcgtctgtcgggtgtacctgagggcatccccacagagacccggctgctg
gacctcagtcggaaccggctacgctgggtgtcaccaggagacctggcaccatatccacgg
ctggaagaagtggacctcagcgagaacttaatctccacactggagcccaatgcctttgcc
agtctgcaggcactgcgaacactacatcttcgtggaaaccagctgaaactggtgcctatg
ggcgcctttgctcgcctgtcgaacctcacaaccctggacctgagtgaaaacaagattgtc
atcctgttggattatacttttcaggacctgcacagtctcaaacaccttgaggttggtgac
aatgacttggtctacatctcccataaagctttctcaggattgctgggtctggaagactta
accatagaaagatgcaacctgacttcaatttctggccaaactctatcctacctacgcaac
ctggtcacccttagattacgccacctcagcatctctaccattgaagaccaaaacttccgc
aagatgtctgctttgcgagggctagagatagacaattggccttacttggaatacatctcc
cctcttagtttccagggtctaaacttgacctggctgtccattactaacaccaacattact
gcagtcccttctgcttctttccgcaaccttgtttacctgacatcccttaatctctcctac
aaccccatatctgtgctggaaccctgggcattcaaggatcttataaggctgaaagagcta
cacatggtcagcactaacctacaagctgtagagcctcatgctctgggtggtctgaggcag
attcgggtgctcaacctctccaacaatgaactggtcacactggaagacagctcctttcat
tccgtcaacagccttgaaacgctacgagtagacgggaatccacttgcttgtgactgccgg
cttctctggattctgcaacgcagacgcactctgaactttgatgggaaaatgccaatatgt
gctgctccacctgaggtacagggtaatatcctgagcagctttccggattctgcattattt
gactacttcacttgccagaagccgaagattcgcaaccggaagcttcaacaggtgacagcg
cgagagggtcagttggtgtccttcctgtgtcgtgctgatggtgaacctccgcctgccatc
atctggatctcaccacagcggcgaaagatcacctcgaaaagcagcagcaggatcaccgtc
ttaccaagtggaacgttggagatccgatatgcccaggtgactgacagtggcacatacatc
tgcatcgccagcaatgcgggtggcaacgacacctactttgccacactgacggtgaaagga
caaccggtggaccccgctatgttcgccaaccgttctctgtatgcggtggactttaatgac
actggtctgaacagcacacgtgtcttccttaagttcacacttgacctcaccacaatcctg
gtgtctacagccatgggctgcatcaccttcctgggtgtagtactcttctgtttcctgctg
ttgttcgtgtggagccgcggaaggggtcaacgcaggaacaacttcacagtagagtactca
ttcaggaagaccgaggggcccactaccagttcgacctctggagggacccgcaagttcaac
atgaaaatgatatga
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