Ictalurus punctatus (channel catfish): 108280301
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Entry
108280301 CDS
T04658
Name
(RefSeq) uncharacterized protein LOC108280301 isoform X1
KO
K05769
Rho guanine nucleotide exchange factor 4/29
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
108280301
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108280301
Membrane trafficking [BR:
ipu04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
108280301
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RhoGEF
SOS1_NGEF_PH
SH3_1
SH3_2
PH
SH3_9
DACNV
Motif
Other DBs
NCBI-GeneID:
108280301
NCBI-ProteinID:
XP_017350637
Ensembl:
ENSIPUG00000015529
UniProt:
A0A2D0T6X3
LinkDB
All DBs
Position
20:24449220..24497067
Genome browser
AA seq
2918 aa
AA seq
DB search
MEEADLESYLSAKFHLSACIFCWALLKICQRRLRASPVVSQTPAVEDFATRAAHPEDVDS
LQEKSAESRDVWRESALEEAQDMTEEYFETCSWHGDASSDYIGDHVNFSSPKRSPGLRKQ
DSEGQHAVVGGPQRNTDGEELTVALGSECSFPDSDSGCAVLEEAGLPFLSHTSVLDAPKD
SDSQLFTTGEELLVQVEDSCDAVILEDSGCDEAANQSPSEEAGLPSILQSSTAAEDLTGS
DLVVASRDLVDVSSSKCLRKLDSSYSERMDDVLEINTGEEQLLALLSSESSVMISDHSGH
RSSLEIVSEEAGLPSISQATSEETLTLTDRSEAAPRLEQTPDLTTDHRKCSSPRSSPDLR
NLHSGCDEVLNGSSVEEAGLPFISQASVSVPNLTDSQLFTIPQEKPDLIYRSTSEPELNS
TSDFTVTSNHRDHGIFPSPKSSPDLRNLDSSHSEGKNSGLEMNTDGEQLLEPLTRECRVI
ILDHNAADVSAVRIFSKEAGLPSISEVSVSDPDVIDSQLFPTSVETPVELTCRSEEARQL
ENTSNLVVASNDQVDCSPKRSPDLRDLENLESSHSEIKNDGQQMNADEVQHKVPLENSAV
VVSAVILDDSDDEAANWSFLEEAGLPSILHTNTASKDLTDSELFTTEDTLTSTDQTDTVL
QLDNASESDAPSRDLVECSSPDHKHLDLVHLEIKNDGVQLKTVTEELVVPLTGNYSAVIL
DSLSCDEIVDPSSFETLSKEAGLPFISQASTSDTALITDQTEAVAQLDRPSSDLDFARED
QFDFPSPKSSPDLRDLDSSPSERKNSGLEMNTDGEQLMVPLANDCSVVTADDLENAEIVN
RLSSEEAGLPSICQASVSDTDSIDSQSFTASTCTLTLTDRSEAEPQLETSSDLDHVDFSS
SEHFTDLRNLDSAHSERKNDGLEVNAEGEELSVPLVGGCNAFNLDVSRCDEVLKGSSLEE
AGFSSVSQASVSHTTSKNLTSEEIPTMRDKIKAESQLDSTFHLDGSRTDHGSIPSPTSSP
EIRNLDSSYSERKGTDKEELVVPLASECNGEDDVENAEIDHCLSPEETGLPSQNEGLEKN
KDGEELIVLLDPNAVILGDPGQDEVLNGPSPEVAELLSISQDGTYNTDSISSHLFTSCKH
TLAPPDGSEAEPSLENASDLTGASRNEEESDNVNKLENLTVPELSQIILSTNMVEHLGQI
DEARVKPSEVNSNIFVDLSVDAKMFVDPLMGGCPCVQSSVSSSLQSEGVTSLQKDQRHFS
NPNINKENLFESSPSIKDSDDYSAEEDSSSPSCANGFIPELHVPMNDEQTLDLDNDQTER
RSKNVDDLINVPFLNTFSVKEFTVIPQKEQEVIYSDNSGYIDSYVMPSSAGKESQRVPFD
CVRGDVVDSYVGQLPGPVEVLFKESTPLGSLNITKFTKQVLQGDQATSEKVCAKEHEASI
SYDDYCMQETSGLKASLHFDGSHHGSDTNNNTKQHTPETPCTLHAPTLEQELWNHVHPSM
QDGPSNVFSNLSNNSAGFFEISERVMMDYKRDHSNPLDVEDASQGKMYGKECQLGEHQDV
MADPTVRPVADAHRGLIHSSCQSSEFSYALSINGPTCQKILREQSLMPHSASISVTSGSG
TYESEAAPFCPDSLQIQSYPSIDVSTGLVSDLEPIMESEHPQEISESLNGELKDLVSSAN
EDECTPLQRDENDALYNVGSMRGFSDKPEDVDTTSCLTNECDANDDDDDDDDDIPNSASP
DQDFITTNSEEVEDPSHGTTGSNSNSTGSSQSLLKNKETKSMSAGKSSKFSRFTRIPSFR
KSKREIKVGSKVEPESKISPEVGEERNQTPSHNPTVDHSTKYEDQSSDVVLGKALGVTWN
EQSKSTSSSKNTQQHDSYSERGQTKPVLDPQKKSKSSDNFRMKLALAQKSLSSLFEIRTA
EKDHQQDPSVLNQDTKSKQPWVKRKMSKDSEMLKRTLSLPGPSGAKSRCRHLSDLVSGLT
EDRPDLQGFQSSKGDFKSTSHSEASVSGPKAEPVERNTLSNGLAKNFEAVHSHENISEKP
MHPSVFALTNQLSPSWTRSLGSFEGLDTPTKPMTPKPQNPGVWGQRSSLRNPSKSVATSL
CSLGEGPSLEGLSDRSERRVGQRATRLASAQSFESEYLLEDINSDNRSQTSLVSTNSATQ
SEDGGTSSLQSSSSVLRVRRRDRRVVRPRPVSDLCSWTLPLREIGETAAGAIQERNVTDN
WTAKAQKRSCSDELLGEFQEVQKTKVMLQRSLGTLSTTSEEQQKVQMRLSFTSPQQLSST
SLKDHFFSQSTPIGLDCLHWPRPVSFSESCLVRPSEHTLAQPAALDTAADLGVIRGVKAI
RGVMSHYWSLESLHSTNALVITDGPQDKSGLGDEVGSEDELYNDFHISANRLGGGEQLAI
NELISDGSVCAEALWDHVTMDDQELGFKAGDVIEVVDATNKEWWWGRVQESEGWFPASFV
RLRVNQDEPLEDDVIQGAVESGGAGVGGSCGPGLPCKEQMRANVINEIMSTERDYIKHLK
DICEGYIKQCRKRTDMFTEEQLRTIFSNIDELYRFQKKFLKALEKKYNKEQPHLSEIGSC
FLENQTDFQIYSEYCNNHPNACVQLSRLMKMKKYVFFFEACRLLQKMIDISLDGFLLTPV
QKICKYPLQLAELLKYTNPQHRDYKDVEAALNAMKNVARLINERKRRLENIDKIAQWQSS
IEDWEGEDVLSRSSDLIFSGDLTKISQPQAKGQQRMFFLFDHQLVFCKKDLLRRDILYYK
GRLDTDQMEVVDVEDGKDKDLNVTVKNALKLISPDGAEIHLLCAKKPELKQRWLRAFADE
RQQVRHDRDTGFSITDVQKKQAMQNVSKNPPAGKPKALHHLLSLKAPLLRSKSSKCLHYP
ESPGPDYYSSPLPEVIAPPGVLRRAISWVSSQSRDLLR
NT seq
8757 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagcagatctggagtcttacctcagcgccaagtttcatctctcagcctgtatt
ttctgctgggcgctgctcaaaatctgccagaggagattacgcgcgtctccggtcgtctcg
cagactccagctgtcgaggacttcgctacacgtgctgctcatccagaagatgtcgactct
ctccaggagaagagcgcagaaagtcgagatgtttggagagaatcagcactggaagaagct
caggacatgactgaggagtattttgagacgtgctcgtggcacggcgacgcttcctcggat
tatattggagatcacgtgaacttctcttctcctaaacgctcccctggcctcagaaagcag
gactcagaaggtcagcatgcggtagttggtggtccacagcggaacacggatggagaggaa
ctcacggtagcattgggaagcgagtgcagcttcccagactcggattcaggatgtgcagtt
ctcgaggaagctggacttccctttctctcacataccagcgtgttggatgcaccaaaagac
tccgattcacaactttttacaactggtgaggaactcctggtacaggtggaggacagctgc
gatgcagtgattttggaggattcagggtgtgatgaagctgcaaatcagtcaccatctgag
gaagctggacttccttccatcctgcagtccagcacagcagcagaagacttaactggttcg
gatttagttgttgcaagcagagatcttgtggatgtttcttcttctaaatgcctccgaaag
ctggactcttcttattcagaaagaatggatgatgttctcgagataaacactggtgaagag
caactcctggcactattatccagtgagtccagtgtaatgatttcagatcattcagggcat
cgttcatctcttgagatcgtgtcggaggaagctggacttccttccatttctcaggctacg
tctgaagaaacccttacgctgactgacagaagtgaagcagcgccgcggttagaacaaact
cctgatttaaccacagatcataggaaatgttcttctcctagaagctctcctgacctcaga
aatcttcattcagggtgtgatgaagttctaaatggttcatccgttgaggaagctggactt
cctttcatctctcaggctagtgtctctgtcccaaatttgacggattcacaacttttcaca
attcctcaagagaaacctgatctgatctacagaagtacatcagaaccagagttaaacagc
acttcagatttcactgttacaagcaatcacagagatcatgggatctttccttctcctaaa
agctctcctgacctcaggaatctggactcttctcattcagaagggaagaacagtggtctg
gagatgaacacggatggagagcaactcctggaaccattgacaagggagtgcagggtgatc
attctcgatcataatgctgctgatgtttcagctgttaggattttctccaaggaagctggg
ctaccttccatctctgaggttagcgtatccgacccggatgtgattgattcacaacttttt
ccaacttccgtagagacacctgtagagctcacctgtagaagtgaagaagctcgtcagtta
gaaaacacttcaaatttagttgttgcaagcaacgatcaagtggattgttctcctaaacgt
tctcctgacctcagagacctggaaaacctggagtcatctcattcagaaataaagaatgat
ggtcagcagatgaacgctgatgaagtgcaacacaaagtaccactggaaaatagtgcagta
gtggtcagtgcagtgattttagatgattcagatgatgaagctgcaaactggtcatttctt
gaggaagctggacttccttccatcttgcacaccaacactgcatcaaaagacttgacggat
tcagaactttttacaactgaagatacacttacatctactgaccaaactgacacagtgctc
cagttagacaacgcatcagaatcagacgccccaagcagagatcttgtagaatgttcttct
cctgaccacaaacatctggacttagttcatttagaaatcaagaatgatggcgttcaatta
aaaacagtcacagaagaacttgtagtacctttgacaggaaactacagtgcagtgatttta
gattctttatcctgtgacgaaattgtggatccatcatcgtttgagaccttgtccaaggaa
gctggacttcccttcatctcccaggccagcacgtctgacacagctttgattactgaccaa
actgaagctgtggcccagttagacagacctagttccgatctagactttgcacgtgaagat
caatttgatttcccttctcctaaaagctctcctgacctcagggatctggactcttctcct
tcagaaaggaagaacagtggtctggagatgaacacggatggagagcaactcatggtacca
ctggctaatgactgcagtgtagtaactgcagatgatctggagaatgcagaaattgttaat
cggttatcttctgaggaagctggacttccttccatctgtcaagctagcgtgtctgacaca
gactcaatcgattcacaaagttttacagcttctacgtgcacactaaccctcactgaccga
agtgaagcagaaccccaattagaaacctcttctgatttagaccatgtggacttttcttct
tctgaacactttactgacctcagaaacctggactctgctcattcagaaagaaagaatgat
ggcctggaggtgaatgcggagggagaggaactctcagtacctctggtaggtggctgcaat
gcatttaatttagatgtctcaaggtgtgatgaagttttaaaaggttcatctcttgaggaa
gctggattttcatctgtctcacaagctagtgtatctcatacaacatcaaaaaacctgact
tctgaggagatccctacaatgagagacaaaattaaggccgaatcccagttagacagcact
tttcatttagatggttcgagaacagatcatgggagtataccttctcctacaagctctcct
gaaatcagaaatctggactcgtcttattctgaaagaaagggaactgataaagaggaactc
gtggtaccattagcaagtgaatgcaatggagaagatgatgttgagaatgcagaaattgat
cattgtttatctcctgaggaaactggacttccttcacagaatgaaggtctggagaagaac
aaggatggagaggaactcattgtactcttggaccccaatgcagtgattttaggtgatcca
gggcaggatgaagttctaaatggtccatctcctgaggtagctgaacttctttccatctct
caggatggcacgtacaacacagattcgatcagttcacacctttttacatcttgtaaacac
acccttgcaccaccagatggaagtgaagcagagccttctttagagaacgcatctgattta
actggtgcaagtagaaatgaagaagaatcagataatgtaaataaactggagaatctcact
gttcctgaattatcacagataattttaagcacaaatatggtagaacatctgggacagatt
gatgaagctagggtcaaaccttcagaggtaaatagtaacatatttgtggatctatcagta
gatgcgaagatgttcgtagatccattaatgggtggatgtccttgtgttcagtcttctgtc
agctctagtcttcagtctgaaggtgtaacatcactccaaaaggatcagagacacttttcc
aatccaaacatcaacaaggagaacttattcgaaagttctccgtctattaaagacagtgat
gattattcagcagaggaagattcctcgagtccgtcgtgtgctaacggttttattccagag
cttcacgttccaatgaatgatgaacaaactttggatttggacaatgatcaaactgaaagg
cggtctaaaaatgtagatgatttgataaatgtgccgtttctgaacactttcagtgtgaag
gaattcacggtcataccccagaaagagcaggaggtcatttattcagataactcgggttat
atcgactcttatgtgatgccatcttcagctggtaaagaatcacaacgtgttcccttcgat
tgtgttcgaggagatgttgtagacagctatgtaggacaactaccaggtccagttgaggtt
ttattcaaggaatcgactcctttaggttctcttaacatcaccaaattcactaaacaggtc
ctgcaaggagaccaggctacgtctgagaaggtctgtgcgaaggagcatgaagctagtatt
tcatatgatgattattgtatgcaggaaacatctggcttaaaagcctcactgcattttgat
ggttcacatcatggttcagacacaaacaataacacgaagcagcacacacctgagacacct
tgcactttacatgctcctacactagaacaggaactctggaatcatgtgcatccatccatg
caagatggtccctcgaacgtcttctcaaatttatcaaacaattctgccggcttctttgag
atctctgaacgagtcatgatggattacaaaagggatcattcaaatccacttgatgtagaa
gatgcttctcaggggaagatgtatggtaaagagtgccagttgggggaacaccaggacgtc
atggcagatcctactgtccgtccagtcgcggatgctcaccgtggactgattcattccagt
tgtcagagctctgagttttcatacgctctttctataaatggacctacatgtcagaagatc
ctccgagagcaaagcctaatgcctcactctgcctcaatcagtgttaccagtggatcagga
acttatgaatccgaagcagcacctttttgtccagattcacttcagatccagagttaccct
tctatagatgttagcactggcctagtatcagatttggagcccattatggagtcggagcac
cctcaggagatctcagagagtttgaatggagaactgaaggatcttgtatcatctgcgaat
gaggacgaatgcacccctttacaaagggatgaaaatgatgcgctatacaatgtcgggtct
atgagaggattttctgataaaccagaagatgtagacaccacctcttgtctgacaaacgag
tgtgatgctaatgatgatgatgatgatgatgatgatgatattcccaattccgcatctcca
gatcaagactttattacaacaaacagtgaagaagttgaagatcccagtcacggcacaaca
ggaagcaactcgaactccactggcagcagccagagcttattaaagaacaaggagaccaag
agcatgtctgcagggaaaagctcaaagttctccaggttcacaagaatcccctccttccgc
aaaagcaagagagagatcaaggttggaagcaaggttgaacctgagagcaaaatatctcct
gaggttggagaggagagaaatcagacacctagtcataatcctactgtagatcactcgaca
aaatacgaggatcaatctagtgatgtggtcttggggaaagcccttggtgtaacctggaat
gaacaatccaaatccacgtccagctccaagaatacacaacaacatgacagttacagtgag
cgagggcaaacgaaacctgttcttgatccccagaagaaaagcaagagcagtgataacttc
cgcatgaagctcgcactggctcagaagtctctgtcgagcttgttcgagatccgaactgct
gaaaaagaccaccaacaggatcccagcgttctgaaccaggatacaaaatccaagcaacct
tgggtgaagagaaaaatgtctaaggattctgagatgctaaagagaactctctctcttcct
ggaccaagtggtgccaagtctagatgtcgccacctgagtgacttagtgtctgggttaacc
gaggatcgtccggatcttcagggattccagagctccaagggggattttaaaagcacatca
cactctgaagcatcagtgtctggacctaaggcggagcctgttgagaggaatacactatct
aatggcttagctaaaaactttgaggctgtccacagtcatgagaacatctcggagaaaccc
atgcaccctagtgtttttgctctaacaaatcagctatctccatcctggacaagatccctg
ggttcctttgaaggacttgatacaccaactaagccaatgactcccaaaccacaaaatcct
ggggtttggggccagaggagcagcctccgcaacccctcaaaatccgttgccacctccctg
tgttctcttggtgagggtccgagtttggagggactgtcagatcgttcagaaaggcgagtt
gggcaaagagcaacacgacttgcgtcggctcagtcctttgagtcggagtacttactcgaa
gacatcaactcggacaaccgatctcaaaccagcctggtgtccaccaactccgccacgcag
tctgaggatggtggtacatcatctctccagtcatcttcgtccgtgctccgtgtcagaaga
cgcgatcggcgtgtggtccgacccagaccggtctctgacctctgcagctggactttacct
ctgcgggaaatcggagagacggcggccggtgcgattcaggagaggaacgtcacagataat
tggacggctaaggcgcagaagagatcgtgctcagatgagctgctcggggagttccaggaa
gtgcagaagacgaaggtgatgctgcagaggagcctcgggacgctgagcaccacatctgaa
gagcagcagaaagtacagatgagactgtccttcacttctccacagcaattgtcctccacc
tctcttaaagaccacttcttctctcagagcactccgattggactggactgtctccactgg
ccacgcccagtttcattctcagagtcgtgtctcgtccgaccttcagagcacacactcgcg
cagccggccgctctcgacacagcagcagatttgggagtcattaggggggtgaaagcgata
cgaggggtcatgtctcattactggagcctagaaagtctacactccaccaacgcgttggtg
atcactgatggacctcaggataaatcgggtctgggtgatgaggtgggcagtgaagacgag
ctgtacaacgacttccacatttctgccaaccgcttaggaggaggagaacaactcgccatt
aacgagctgatcagcgatggcagtgtgtgcgccgaggctctgtgggatcacgtcaccatg
gacgaccaggagctcggcttcaaggccggagacgtcatcgaggtggtggacgccaccaat
aaagagtggtggtggggacgagtgcaggagagcgagggatggttccccgccagcttcgtc
cggctgcgtgtgaatcaggacgagcccctggaggatgatgtaatccagggggcggtggag
agcgggggggcgggggtgggcgggtcgtgtgggcccgggttaccgtgtaaagagcagatg
agggcgaacgtgattaacgagatcatgagcacggagagagactacatcaaacacctgaag
gacatctgtgagggctacattaaacagtgccgtaagcggaccgacatgttcacagaggag
cagctcaggaccatcttcagcaacatcgacgaactttaccgcttccagaagaaatttctc
aaagcgctggagaaaaaatacaacaaagagcaaccacacctgagcgagatcggctcctgc
ttcctggagaaccaaacggattttcagatttactcggagtactgtaacaatcaccccaac
gcctgcgtccagctctccagactgatgaagatgaagaagtacgtgtttttcttcgaggct
tgtcgtctgctgcagaagatgatcgacatctcgctcgacggcttcctgctcacacctgtg
cagaaaatctgcaaatatccactgcagctcgccgagctcctcaaatacaccaaccctcag
cacagagattataaggacgtagaagcagcgctgaacgcgatgaagaacgtggcgcggctg
atcaacgagaggaaacgacgcctggagaacatcgacaaaatcgctcagtggcagagctcc
atcgaggactgggagggtgaggacgttctgagtcggagctctgatctgatcttctcagga
gatttgaccaaaatctctcagcctcaggccaaaggtcaacagcgcatgttcttcctgttc
gatcatcagctggtcttctgcaaaaaggacctgctccggagggacattttatattataaa
ggacgtctggacacggaccagatggaggtggtggatgtagaagacggaaaagataaagat
ctgaacgtgacggtgaagaacgcgttaaagttgatatctccggacggagcagagattcat
ctcctgtgtgctaaaaaacccgagctgaagcagcgctggctccgagccttcgccgatgag
cggcagcaggtccgacacgaccgagacacgggattctccatcacagacgtgcagaagaag
caggccatgcagaacgtgtccaaaaatcctccagctggaaaacctaaagcgttacaccac
ctgctgtctcttaaagctccacttctgcgctccaaaagctccaagtgccttcattaccca
gaatcccctgggcctgactactactcctccccgcttcctgaagttatagcgccccctggt
gtcctgcgcagggccatttcctgggtctcctctcagagtagagacctgctccgatag
DBGET
integrated database retrieval system
