Ictalurus punctatus (channel catfish): 108280318
Help
Entry
108280318 CDS
T04658
Symbol
zgc:110269
Name
(RefSeq) probable flap endonuclease 1 homolog isoform X3
KO
K04799
flap endonuclease-1 [EC:3.1.-.-]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03030
DNA replication
ipu03410
Base excision repair
ipu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
108280318 (zgc:110269)
03410 Base excision repair
108280318 (zgc:110269)
03450 Non-homologous end-joining
108280318 (zgc:110269)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ipu03032
]
108280318 (zgc:110269)
03400 DNA repair and recombination proteins [BR:
ipu03400
]
108280318 (zgc:110269)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ipu04147
]
108280318 (zgc:110269)
DNA replication proteins [BR:
ipu03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
108280318 (zgc:110269)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
108280318 (zgc:110269)
DNA repair and recombination proteins [BR:
ipu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
108280318 (zgc:110269)
Exosome [BR:
ipu04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
108280318 (zgc:110269)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XPG_I
XPG_N
5_3_exonuc
XPG_I_2
Motif
Other DBs
NCBI-GeneID:
108280318
NCBI-ProteinID:
XP_017350674
Ensembl:
ENSIPUG00000015374
UniProt:
A0A2D0T714
LinkDB
All DBs
Position
20:complement(24411302..24416390)
Genome browser
AA seq
347 aa
AA seq
DB search
MGIAKLADLIRGDAPGSITYKEIGDYTGKIIALDTSIIMNQFRSAVPNLNLSLLGVFYRT
LTFLEHDIKPVFVFDGDPPEQKRALLEKRAQSAGRSSAQRPHAGVSSQTKEFLRLLMLLG
VPCVQAPSDAEAFCAQLVSSGVVDAVASEDMDTLAFGGTVLLRQLNAKRVSEVMEYSLPK
LLEILQLTQKEFVDLCILLGCDYCDKITGLGPSRALKLIQQHRNIEDVMLNINTKTHRVP
LGWQYQAARKLFLDSPRSELPHLQWSEPNEPELVNFLCQEKHLKEEKVRGRMEKFRQKLA
HRRKEREEEKGKGGGRQTSLDQFFPVTRKRRSAEAGGSATRKQQKTK
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atgggaatcgcgaaattagcagatttgattcgtggtgacgctccgggttcgataacttac
aaagagatcggagattacactgggaaaataatcgcacttgacacctccattattatgaac
cagttccgttcagctgttcctaatctgaatttaagcttgttaggtgtgttctaccgcacg
ctgacgttcctggagcacgacatcaagccggtgtttgtgttcgatggagatcctcctgag
cagaagagagccctgctggagaaaagagcacagagtgcaggcaggagcagcgcacaacgc
cctcacgctggtgtgtcgtctcaaaccaaggaattcctgcgtctcctcatgctcctcggt
gttccttgtgtccaggctcccagtgacgccgaggcgttttgtgctcagttggtcagtagt
ggtgtggtggatgccgtggcctcagaggacatggacacgctggcgttcggagggacggtt
ctccttcgccagctcaacgcaaagagagtgagtgaggtgatggagtactctctgccaaag
ttactggaaatcctgcagctcacacaaaaagagtttgtagatctgtgtattttattggga
tgtgattattgtgataagatcacgggtttggggccgagtcgagcgctgaagctcatccag
cagcaccgcaatatagaggacgtgatgctcaacatcaacacgaagacacaccgggtccct
ttaggttggcagtaccaggctgcgcggaagctgttcctggactcgccccggtctgaactg
ccccatctgcagtggagtgaacctaacgagccggagctggtgaacttcctgtgtcaggag
aaacacctcaaggaggagaaggtgcgagggcggatggagaagttccggcagaaactcgcc
cacagaaggaaggagagagaggaggaaaagggaaaggggggaggcagacagaccagtttg
gaccaattctttcctgtgacacggaaaagacggtctgcagaagcaggaggatccgcaacc
aggaagcaacagaagactaaataa
DBGET
integrated database retrieval system
