Ictalurus punctatus (channel catfish): 108280403
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Entry
108280403 CDS
T04658
Name
(RefSeq) pre-mRNA-splicing factor 38B
KO
K12850
pre-mRNA-splicing factor 38B
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108280403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ipu03041
]
108280403
Spliceosome [BR:
ipu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
108280403
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Paralog
GFIT
Motif
Pfam:
PRP38
Motif
Other DBs
NCBI-GeneID:
108280403
NCBI-ProteinID:
XP_017350830
Ensembl:
ENSIPUG00000014942
UniProt:
A0A2D0T865
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Position
20:complement(11346753..11383993)
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AA seq
464 aa
AA seq
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MAGNPQQQAVSKPSSGKHGNVLPLWGNEKTMNLNPMILTNVLSSPYFKVQLYELKTYHEV
VDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYKLFTLKLTRKQV
MGLITHTDSPYIRALGFMYIRYTQPPADLIEWFEPFLDDEEELDVKAGGGCVMTIGEMLR
SFLTKLEWFSTLFPRIPVPVQKSIDQQMKNRPRKPPQKESKEDEEDADWHRSRSPRRTPS
PLRSPNRSRSRSRHRERRGASFDRELERERDRQRKDRDRERDRVADRDRDRERDRRHSRT
PDRASEWRRSREQRNERKEREKEQDGESERERSRRKERKHKERTSGGERERERSKEKRAK
GEGDDRRHKDEREERKQREERKCKRSSQSRSRERRHKGERSSRKCSRSRSRSRQEPEEKE
KSRKRECSHSKEHMHKRSHSREHSHRRDARNGKDHTRMDIDGTP
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atggcggggaatccgcagcagcaggccgtgagcaaaccttcttcagggaaacacggcaac
gttttacctctgtggggaaatgagaagacaatgaacttaaaccctatgattctcacaaat
gtgttatcgtctccatatttcaaggttcagttatatgagctgaagacctatcatgaggtt
gtggacgagatctacttcaaggttacccatgtggagccctgggagaaaggcagcagaaaa
acagcagggcagactggaatgtgcggaggggtgcgaggtgtaggcacaggtggtatcgta
tcaacagctttctgtctactgtacaaactgttcacactaaaactgacccgaaaacaggtg
atgggtctcattacacacacggactccccgtacattcgagcacttggcttcatgtatata
cgatacacacaaccccctgcagacctgattgagtggtttgagcccttcctagatgatgag
gaggagctggatgtgaaggctggcggtgggtgtgtgatgactatcggtgagatgctgcgt
tccttcctcacaaagcttgaatggttttctacactgtttccacgcatcccagtgcctgtg
cagaagtccatcgaccagcagatgaaaaaccgaccacgaaaaccaccacagaaagaaagc
aaagaggatgaggaggatgcagactggcaccgctcaaggtccccgaggagaacaccgagc
cctctgaggtcccccaaccgctcacgcagccgcagtcgccacagagaacggcgtggagcc
agctttgaccgcgagcttgagagagagagggaccgccagcgcaaagatagagacagggaa
agagacagggttgcagacagggacagagatcgagagagggatcgtcggcattcccgaacc
ccagatcgagcctctgagtggaggaggagccgtgaacagaggaatgagagaaaagagagg
gagaaagagcaggatggggagagtgaaagagagcgaagccgtcggaaggaacggaagcac
aaagagcgcaccagtggtggagagcgagaaagggaacgctcaaaagaaaagagagccaaa
ggagaaggagatgaccggcgtcacaaggatgagcgagaagagagaaaacaaagggaggag
cgcaagtgcaagcggtctagccaaagcaggagtagagagaggaggcacaaaggtgagcgc
tctagcaggaaatgttctcggtcacgctccaggagtcgtcaggaaccagaggagaaggag
aagagtaggaagcgcgagtgcagccacagcaaggagcatatgcacaaacgcagtcacagc
cgagaacacagtcaccgcagagatgcccgaaatgggaaagaccatacgagaatggacatt
gacgggactccttga
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