KEGG   Ictalurus punctatus (channel catfish): 108280484
Entry
108280484         CDS       T04658                                 
Name
(RefSeq) THO complex subunit 6 homolog isoform X1
  KO
K13175  THO complex subunit 6
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu03013  Nucleocytoplasmic transport
ipu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108280484
  09122 Translation
   03013 Nucleocytoplasmic transport
    108280484
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ipu03019]
    108280484
   03041 Spliceosome [BR:ipu03041]
    108280484
Messenger RNA biogenesis [BR:ipu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     108280484
Spliceosome [BR:ipu03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    108280484
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40 WD40_Prp19 Beta-prop_THOC3 WDR55 WD40_CDC20-Fz WD40_Gbeta Beta-prop_EML Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd ANAPC4_WD40 Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_SCAP Beta-prop_EML_2 Beta-prop_RIG_2nd Beta-prop_ACSF4 Beta-prop_IP5PC_F WDR54 NBCH_WD40 Beta-prop_NOL10_N Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd WD40_like Beta-prop_WDR75_1st Beta-prop_WDR36-Utp21_1st Beta-prop_IFT122_1st Beta-prop_TEP1_C Beta-prop_WDR41 Beta-prop_WDR90_POC16_2nd Beta-prop_LRRK2
Other DBs
NCBI-GeneID: 108280484
NCBI-ProteinID: XP_053532729
UniProt: A0A9F7TH40
LinkDB
Position
2:complement(39599380..39615519)
AA seq 387 aa
MIHSCIRVPWSSVSSFTPGLNGIFPVNPGFRFTLISDGLESSSEALIRSEFILKLFLCVL
IRNFFARFAFRFLKIHFVPGLMVCCDWLDFIVWCLLFLCSLSAALSPDATEASQKPVLTF
TAHEGPVFSLISTDTHLLSSGNGEISAWSWAELGKKNTKAVWTKRPDYKTGLEIPEINAM
IINSRENSLVVGGGDNNIHIMDLETGTFKSVLQGHTDYIHCLSLRERDGEILSGAEDGAV
RMWDGRTGQSVHCVEVYKYEECARPQYGKWISCVTTDSDWMLCGGGPALSLWHLRSMSPT
SIFPLSGCQREAVFHQDLIFAVGEGPHVSHCLLGGSVKAQIPCTPPSLNTLALNLGTTEH
RVMTVAGSSNQIDVFTNFSYRAFSLSF
NT seq 1164 nt   +upstreamnt  +downstreamnt
atgattcattcatgcattcgtgtgccgtggtcttctgtctcgagctttaccccgggtttg
aatggaatcttccctgttaatcctggttttaggtttacgttaatctcagatggacttgaa
tcgagtagcgaggccttgattaggtctgagtttattctgaagctcttcctgtgtgtttta
atcagaaacttttttgcaaggtttgcgtttagatttttgaaaatacattttgtacccggt
ttaatggtgtgttgtgattggttggattttatcgtgtggtgtttgttgttcctctgcagt
ctttcagctgctctgagtccagacgccacagaggccagtcagaaacccgtcctcaccttc
accgcccacgaaggtcccgtgttctcactgatctccacggacacacacctcctcagctcc
gggaacggagagatcagcgcgtggagctgggcggagctcggcaagaagaacactaaagct
gtttggacaaagagacccgattacaaaaccggtctggaaatccccgagatcaacgccatg
atcatcaacagcagagagaacagcttggtggtcggtgggggagacaacaacatccacatc
atggacctggaaactggaaccttcaagtcagttctgcagggtcacacagattatattcac
tgtttatctctgagagagagggacggagagatcctgtcaggagcggaagatggagccgtg
agaatgtgggacgggaggacgggccaaagcgtgcactgtgtggaggtttataaatatgag
gaatgcgctcgcccccagtacgggaagtggatcagctgcgtgacgacggattctgattgg
atgctgtgtggtggaggccccgccctctctctgtggcatctccgctccatgtctcccacc
tccatcttcccgctgagtggctgtcagagggaagccgtgtttcatcaggacctgatcttt
gcagtaggtgagggtccacacgtgtctcactgtttgctggggggaagcgtgaaagctcag
atcccctgcactcctccgtcactgaacacactcgccctgaaccttggtaccactgaacac
agggtgatgaccgtcgcaggcagcagcaaccagatcgacgttttcaccaacttctcctac
agagccttctcgctgtccttctga

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