Ictalurus punctatus (channel catfish): 108280667
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Entry
108280667 CDS
T04658
Symbol
lrrc4ba
Name
(RefSeq) leucine-rich repeat-containing protein 4B
KO
K16360
netrin-G3 ligand
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04514
Cell adhesion molecule (CAM) interaction
ipu04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
108280667 (lrrc4ba)
04517 IgSF CAM signaling
108280667 (lrrc4ba)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ipu04515
]
108280667 (lrrc4ba)
Cell adhesion molecules [BR:
ipu04515
]
Immunoglobulin superfamily
NGL family
108280667 (lrrc4ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
LRR_1
LRR_14
ig
LRR_9
V-set
LRRNT
Ig_2
LRR_EndoS
Motif
Other DBs
NCBI-GeneID:
108280667
NCBI-ProteinID:
XP_017351439
Ensembl:
ENSIPUG00000009223
UniProt:
A0A2D0T988
LinkDB
All DBs
Position
2:complement(38681559..38738939)
Genome browser
AA seq
728 aa
AA seq
DB search
MRITTVTVLPNPAPFFFLLAQLLFWLLLLGQDIAGATSTCPTPCSCSNQASRVICTRRNL
DEVPENISNNTRYLNLQENSIQVIRSDTFKHLRHLEILQLSKNQIRQIEVGAFNGLPNLN
TLELFDNRLTLVPSQAFEYLSKLRELWLRNNPIETLPGYAFHRVPSLRRLDLGELKKLDY
ISDAAFVGLVNLRYLNLGMCGLKDIPNLTPLIRLEELELSGNKLEIIRPGSFQGLESLRK
LWLMHSQMSVIERNAFDDLKSLEELNLSHNSLHSLPHDLFTPLQKLERVHLNHNPWVCNC
DVLWLSWWLKETVPSNTTCCARCHAPPYLKGKYIGELDQSHFTCYAPVIVEPPTDLNVTE
GMAAELKCRTGTSMTSVNWITPNGTLMTHGSYRVRISVLHDGTLNFTNVTLRDTGQYTCM
VTNSAGNTTATAVLNVTAADTSVNYTYFTTVTVETVESTGEEDSALRSINETIIHIPGPT
PSGRLWHDAIPTTTSSLSVFGSSSSPRATKPTFTVSVSEPSYPTGLDDVMKTTKIIIGCF
VAITFMAAVMLVVFYKLRKQHQLHKHHGPARAIEIINVEDEIGASASVRGSGISGGSTMP
QAGSSGGSQSLRLHHPEIVNLPNLARTDHLNHYYKPHHFNNNMMSLGLSGSSGIGLNNNN
NPCSQAQPTPISCSQVPVSVSSIPSSMPLPTLGIHGSLKGLMGKGQNPQIEPLLFKSGSK
ENVQETQI
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgcggatcaccacggtgaccgtccttcctaaccccgcccccttctttttcctgttggcc
cagctgctgttttggctcctcctcctgggccaggacatcgcaggagccacgtcgacctgc
ccgacaccttgcagctgctccaatcaagcgagccgagtgatctgtaccagacggaacctg
gacgaggttccggaaaatatatccaacaacacgcggtaccttaacttacaggagaactcg
atacaggtgataagatcagataccttcaagcacttgcgacacttggagatcctccagctt
tccaagaaccagattcgccagatcgaagttggcgcattcaatggcctcccgaacctcaac
actttggaactgtttgacaaccgtctcacgctggtgccatcacaagcgttcgagtatctc
agcaagcttcgggagctctggcttcgtaacaaccccatcgagacgttgccaggctatgcc
ttccaccgcgtgccctcccttcgccgccttgatctgggtgagctcaaaaagctggactac
atttcagatgctgcctttgtcggccttgtcaatctgcgctacctgaacctgggcatgtgc
ggtctgaaggacatccccaacctgacacctctgatccggctggaggagctggagctctct
ggaaacaagctggaaatcataagacctggatcgttccaaggcctggagtctttgcgcaaa
ctgtggctcatgcactcccagatgtctgtcattgaacgcaatgccttcgatgaccttaag
agtctggaagagttgaatctatcccacaattccctgcattcactgccccatgacctcttc
accccattgcagaagctggagagagtgcacctcaaccacaatccctgggtgtgtaattgt
gatgtgctttggcttagttggtggctgaaagaaactgtaccaagtaacacaacttgctgt
gcccggtgccatgcaccaccctacctgaagggcaaatacattggagagctggaccaaagc
catttcacgtgctatgcccctgttatcgtcgagccccccactgacctcaacgtgaccgaa
ggcatggctgctgaactcaagtgccgtaccggaacctccatgacgtctgtaaactggatt
acacccaatggaaccttgatgacccatggatcataccgcgtccggatctcggtgctacat
gatggaactctgaattttacaaatgtcaccttgcgcgacactggacagtacacctgcatg
gtgaccaactcagctggcaacaccacagcaactgccgtcctgaatgtcactgcagcagac
accagtgtcaattacacctactttactaccgtcactgttgaaactgtagaatccacagga
gaagaggattcggccctacgttcgatcaatgagactattatacacatccctggtcctaca
ccttctgggcgtctctggcatgatgccatcccaacaacaacttcctctctatcagttttt
ggatcctcatcttctccccgagcaaccaaacccacatttactgtctctgtctctgagccg
agctaccccactgggctggatgatgtaatgaagactaccaagatcatcattggctgcttt
gtggctattaccttcatggcagctgttatgctggtggtcttctacaagctgaggaagcag
caccagttgcacaagcaccatggaccagcgagagccattgagattatcaacgtggaggat
gaaattggagccagcgccagcgtccgcggaagtgggatctctggtggttccaccatgccc
caggccggatccagtggaggaagccagagcctgcggctgcatcacccggagattgtcaac
ctacccaacctggctcggacggaccaccttaaccactactacaagccccaccacttcaac
aacaacatgatgagtttggggctctctggaagttctgggatcggcctcaacaacaacaac
aacccgtgttcccaggcccaacccacgccgatctcctgttcccaggtgcccgtctcagtg
agctccattccgtcctcaatgcccctgcctaccctcggcatccatggatcactcaaaggc
ctaatgggtaaagggcagaaccctcaaattgagcctttactctttaagagtggctctaag
gagaatgtccaagaaactcagatctga
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