Ictalurus punctatus (channel catfish): 108280676
Help
Entry
108280676 CDS
T04658
Name
(RefSeq) TATA-binding protein-associated factor 2N isoform X1
KO
K13098
RNA-binding protein FUS
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03015
mRNA surveillance pathway
ipu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108280676
09122 Translation
03015 mRNA surveillance pathway
108280676
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ipu03041
]
108280676
Spliceosome [BR:
ipu03041
]
Complex A
Other components
Complex A specific factors
108280676
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Zn_ribbon_RanBP
Motif
Other DBs
NCBI-GeneID:
108280676
NCBI-ProteinID:
XP_053529505
UniProt:
A0A9F7QN88
LinkDB
All DBs
Position
20:complement(5989115..5996008)
Genome browser
AA seq
437 aa
AA seq
DB search
MASDSGYGQPGAPQSYGSYGGSQGYQHGAQGYGQGNGGSSYGGQSYEGYGQSDSYSQSSQ
GYSGYGQQQQSYEGYGQPSTDASSGYGDKPYGQQGSYGQQGSYGQQSEAGPGQSGGSYGG
PSGGYGRRNEGDSRRYGGGDEGGDRSEGYRGRGRGGYERGGYERGGYDRGGFDRGGRGGG
PPSGVGGGDRGGYKNYGGPRDYGQRDDSGEEQDNSDNNTIFVQGLGEEVTTHEVAEFFKQ
IGIIKLNKKTGKPMINLYTDKATGRLKGEATVSFDDPPSAKAAIDWFDGKEFNGKPIKVS
FATRRAEFSQRGGGGGGGGGGGRGRGGFRGRGSFGGGPSFDVKGGDWLCPNSSCGNMNFA
RRFECNKCGTPKPGDSFGDRGGRGGFGGDRGGFRGGRGGFRGGDRGGYGGGDRGGYGGGY
KMGGRGEHREERRDRPY
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgattcaggctatgggcagcctggagccccacaaagctatggatcttatggt
ggatcccagggctatcaacatggtgcacagggttatggtcaaggtaatggcggcagctca
tatggtggacagagttacgaaggttatggacagtcagacagttacagtcagtcatcacaa
ggctactctggctacggacagcagcagcagagctatgaaggttacgggcagccgagcacc
gatgcttcgtcgggttatggagacaagccttatggacagcagggttcttatggacagcaa
ggttcatatgggcagcagtctgaagcaggacctggccagtctgggggctcatacggcggt
ccgtcaggaggttatggaaggcgaaatgagggtgatagcaggcgatatggtggtggtgat
gaaggaggcgacaggtctgaggggtacaggggaagagggcgtggaggttatgagcgtgga
ggctatgaacgtgggggttatgatcgtggtggcttcgaccgaggtggaagaggaggtggt
ccgccctccggtgtgggtggtggtgaccgtggtggctacaaaaattacggtggacccaga
gattatggtcaaagggatgattcaggtgaagaacaggacaactctgacaacaacacaatc
tttgtccaaggccttggagaggaggtcacaactcatgaagttgctgaattcttcaaacag
attggaattattaagttgaataaaaagactggcaaacctatgattaacctgtacactgac
aaagccactggtagactgaagggtgaagcaacagtctcatttgatgaccctccttctgca
aaggctgccattgactggtttgacggcaaggagttcaatggaaagcccattaaggtgtcc
tttgccaccagacgggcagagttctcccaaagaggaggaggaggtgggggaggaggggga
ggagggagaggacgtggaggtttcagaggtcgaggaagctttggtggaggtcccagtttt
gacgttaaaggtggagactggctttgtcccaacagctcttgtggaaacatgaactttgcc
aggagatttgaatgcaacaaatgtggtacaccaaaacctggagacagttttggagaccgt
ggcggtagaggaggctttggtggtgaccgtggtggtttcagaggtggaagaggcggtttc
agaggtggagaccgtggtggttacggtggtggagatcgtgggggctatggtggtggatac
aagatgggaggaagaggggagcacagagaggaaagaagagaccggccctactaa
DBGET
integrated database retrieval system
