Ictalurus punctatus (channel catfish): 108280692
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Entry
108280692 CDS
T04658
Symbol
cldnf
Name
(RefSeq) claudin-3
KO
K06087
claudin
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03272
Virion - Hepatitis viruses
ipu04382
Cornified envelope formation
ipu04514
Cell adhesion molecule (CAM) interaction
ipu04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03272 Virion - Hepatitis viruses
108280692 (cldnf)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
108280692 (cldnf)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
108280692 (cldnf)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
108280692 (cldnf)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
ipu03037
]
108280692 (cldnf)
04147 Exosome [BR:
ipu04147
]
108280692 (cldnf)
Cilium and associated proteins [BR:
ipu03037
]
Other cilia and associated proteins
Stereociliary proteins
108280692 (cldnf)
Exosome [BR:
ipu04147
]
Exosomal proteins
Exosomal proteins of ovarian cancer cells
108280692 (cldnf)
Exosomal proteins of colorectal cancer cells
108280692 (cldnf)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PMP22_Claudin
DUF4064
Motif
Other DBs
NCBI-GeneID:
108280692
NCBI-ProteinID:
XP_017351490
Ensembl:
ENSIPUG00000006594
ENSIPUG00000006610
UniProt:
A0A2D0TA08
W5U9G4
LinkDB
All DBs
Position
20:complement(6065819..6077439)
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AA seq
413 aa
AA seq
DB search
MVSAGLQMLGTALAIIGWILTIVTCALPMWKVTAFIGSNIVTAQINWEGIWMSCVVQSTG
QMQCKVYDSMLALSSDLQAARALCVISILLGVMGILLAIAGGKCTNCVEDESSKAKVGIT
AGVVFIVCGILCLIPVCWSANSIISDFYNPLVPGAQKYEIGASLFKMGRIAKEVWGQTLC
FIGLIGLCLTCGLPMWRTTYFIGANIVTGQIVWDGLWMNCVMQSTGQMQCKIQSSVMSLT
QDLQAAQALIVIAILIAFAGILMTFIGAQCTSCLKNESTMAKLVICGGVLCIVAAVVCLI
PVCWSAAFTITDYSNVLVPTSQKREIGGSVYIGWGTSFVLLLGGIILCTSCPPNDMQQNN
PNTYPYQGPFMGPAGHYMPPKTYPPSVTYSGTYVPGKPYVAPSTYSAVPRQYM
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atggtatctgccgggctacagatgttgggcacagccctggccatcattggctggatcctg
accattgtgacttgtgccctgcccatgtggaaggtcacagctttcattgggagcaacatt
gtgacagcacagatcaactgggagggcatctggatgtcctgcgtggtgcaaagcactgga
cagatgcagtgcaaggtctacgactctatgttggctctcagctcggacctgcaggccgcc
cgcgcactctgtgtcatttccattttgcttggtgtcatggggatcctcctggccatcgct
ggtggcaagtgcaccaactgtgtggaggatgaaagctccaaagcaaaggtgggcatcaca
gcgggtgtggtcttcatcgtctgtggtatcctgtgtctgattcccgtctgctggtcagcc
aacagcattatcagtgatttctacaatcccttagtgccgggtgcacagaagtatgagatc
ggagcttctctcttcaaaatggggagaattgccaaggaggtgtggggccaaacactgtgc
ttcatcggattgattggcttgtgcctaacgtgtggcctacccatgtggcgtacaacctat
ttcatcggtgccaacatcgtgacaggccagattgtctgggacgggctgtggatgaactgt
gtgatgcagagtacgggtcagatgcagtgcaagatccagtcgtccgtcatgagtctgacg
caggacctgcaggcggcgcaagccctcatagtcatcgccattttgattgcttttgctggc
atactcatgacatttattggtgcacaatgtaccagttgcttgaagaatgagtccaccatg
gccaaattggtcatttgtggaggtgtcctatgtattgtggctgctgttgtgtgcctcatt
cctgtctgctggtcagcggcattcacgatcactgattacagcaatgttctcgtacctaca
tcgcagaaaagggagataggtggttccgtatacatcggctggggaacttcattcgttctt
cttcttggagggatcattttgtgcacctcttgtccaccaaatgatatgcagcagaataac
ccaaacacgtatccctaccaagggcctttcatgggaccagctggacactatatgcctcca
aaaacatatccacccagcgttacatattctggaacatacgtaccgggtaaaccatatgtg
gctccgagcacttactcagccgttccaaggcaatacatgtaa
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