Ictalurus punctatus (channel catfish): 108280803
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Entry
108280803 CDS
T04658
Symbol
rabgef1l
Name
(RefSeq) RAB guanine nucleotide exchange factor (GEF) 1, like
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04137
Mitophagy - animal
ipu04145
Phagocytosis
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
108280803 (rabgef1l)
04137 Mitophagy - animal
108280803 (rabgef1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108280803 (rabgef1l)
Membrane trafficking [BR:
ipu04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
108280803 (rabgef1l)
Protein recycling
Other Rab GTPase associated proteins
108280803 (rabgef1l)
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Ortholog
Paralog
GFIT
Motif
Pfam:
VPS9
DUF5601
zf-A20
CCHa1_2
GRHL1_C
Motif
Other DBs
NCBI-GeneID:
108280803
NCBI-ProteinID:
XP_017351711
Ensembl:
ENSIPUG00000004981
UniProt:
A0A2D0TA04
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All DBs
Position
20:4705783..4716239
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AA seq
475 aa
AA seq
DB search
MSSKTERRGIYVDQAALLCKKGCGFFGNSAWGGFCSKCWREVNQKDRAKQIEEDHALAER
LQREEEATYAGSNAGAQSGNSSTQLSKPEEKRNSQKPLTVPAGKKFFSTLAKTTLGRDVN
VPSQPAPTTSISQQPVVEPDQATRQFIDFLKTVQKPGRDIFKQCHSFCHSVAYKKDLGAE
DLSESVQDFYQNLSDRLHTVYKGSPERIEVIMDEVEKYITLQLYEQAFCPESADDEVKDL
AIQKRIRALHWVTVQMLCAPLKEEIPAVSDSLDKAITDVIEMDSKRVPRDKLGYVTRCSK
HIFSAIKRSKREAASADDFLPALIYVVLKANPPRLQSNIQYITRFCNPRRLMSGEDGYYF
TNLCCAIAFIEKLDAQSLNLSPEEFELYMSDQASPDRPQAPGISFSSSSSSRSGPRADRP
ENDLIDWGDGVEASVQDVLDGLHLDSCTPSTSAIDSDNVDSEGLPPPLQPQVFAG
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgagttcaaaaactgaacggcgaggaatctacgtggatcaggcagccctgctctgcaag
aaaggctgcggtttttttggtaactcagcctggggaggtttctgctccaaatgttggcgt
gaggtgaaccagaaagatcgagccaagcagattgaggaggaccacgcgctagcagagaga
ctacaaagagaagaagaggcaacctatgcaggcagcaacgcgggggcgcagtcagggaac
tcgtccacccagctgagcaaaccagaagagaaaaggaatagtcaaaaaccactcactgtc
cccgcaggaaagaaatttttctccacacttgcaaagacgaccctagggagagatgttaat
gttcccagccagccagctcccaccacctccatcagccagcagcctgttgtagaaccagac
caagccacaagacaattcatcgatttcctgaagaccgtgcaaaagcctggacgggatatt
tttaaacagtgccattctttctgtcacagtgtagcttacaagaaggatcttggtgcggag
gatctctcagaatctgtgcaagacttttaccagaacctgtcggaccgattacacactgtc
tacaaagggagtccagagcgaatcgaggtaataatggatgaagtggagaagtacataacg
ctgcagttgtatgagcaggccttctgtcctgaatccgcagacgatgaggtcaaagacttg
gccatccagaagagaatcagggctttgcactgggttacggttcagatgctgtgcgctcca
ctaaaagaggagatccctgcagtgtcagacagtctggataaggccattactgatgtaatt
gagatggactccaagcgtgtgcccagggataagctgggttacgtcaccaggtgcagtaag
cacatcttcagcgcaattaagcgcagcaagagagaggccgcgtcggctgacgacttcctc
ccggcgctcatctatgtggtgctgaaggccaacccgccccggctgcagtccaacatccag
tacatcacccgcttctgcaaccccaggcgcctcatgagcggcgaggatggatattacttc
accaacctgtgctgtgccatagctttcatagagaagctggatgctcagtctctaaacctg
agtccagaggaatttgaactctacatgtctgaccaggcgtcccctgacaggccacaggcc
cctggaatctctttttcctcatcctcttcatcacgtagtggccccagagcggacaggccg
gagaacgacctcatcgactggggagatggagtggaggcctctgttcaggatgtcctggat
gggcttcacctggactcttgcactccgtccacctctgcgatcgactcggacaatgtagac
agtgaggggctaccacctcctctacagccgcaggtttttgctgggtag
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