Ictalurus punctatus (channel catfish): 108281061
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Entry
108281061 CDS
T04658
Symbol
arhgef10la
Name
(RefSeq) rho guanine nucleotide exchange factor 10-like protein isoform X1
KO
K16727
Rho guanine nucleotide exchange factor 10
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108281061 (arhgef10la)
03036 Chromosome and associated proteins [BR:
ipu03036
]
108281061 (arhgef10la)
Membrane trafficking [BR:
ipu04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
108281061 (arhgef10la)
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
108281061 (arhgef10la)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_2
PH_19
RhoGEF
Beta-prop_LRRK2
Beta-prop_RSE1_2nd
IQ_SEC7_PH
SOS1_NGEF_PH
WD40_CDC20-Fz
CFAP43_N
PGM_PMM_II
DUF7675
HTH_6
Motif
Other DBs
NCBI-GeneID:
108281061
NCBI-ProteinID:
XP_053530158
UniProt:
A0A9F7R4W4
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All DBs
Position
21:complement(8491659..8639284)
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AA seq
1254 aa
AA seq
DB search
MSTPPQQPRGITEDDEEEKEGQKETLKDGEMLQKDSTVSPLTKTSSLRKDCELQEDAGKT
RTGRGGTDGIVERSELTSTFLEAAPSGESHKHRQCQFDEDIPSSRSPNQDAENLALAAEL
VKTEEATVSTLASPGVSRADDIQTGGSEVIYDDVPCEDVSRGEGGDMIYEDVQTEEVPQG
PNNGWSSSEFESYDEQSDSEKAASRSKLAPDVRRLRECCAKTKRELASKLGGKYQMHQLM
RAARSGTKDGLEKTKMAVMRKVSFLQKKDHSDEAEDDAGYLDVIVSEAKHPPAQLGPMPE
GLSSHQIVRRHILGSIVQSERSYLESLKRILQEYQRPLLEAEPRILSRRKIRPIFFRVRE
ITQCHCMFQIALASRVAEWDASEKIGDLFVASFSKSMVLDVYSDYVNNFTNAMALIKKAC
LSKPAFLEFLKKKQSSSVDRITLYGLMVKPIQRFPQFILLLQDMLKNTPKGHVDRLPLQL
ALTELETLAEKLNEQKRVADQITETQQLACSVSDRSLSKVLNSDQSSLVLCETLCETVYG
ERGQVLKSKERKVFLFSNMLVCANINIKGPPDISSLVPVGPKYTMKWSAPLLQVQVVEVG
KDTLFQQGGVKRSGSSSTPGKVVLGPPRLFQELTELQHDLSVVEHVTTLVGTLQGKYQNL
NTTVAQDWCLALQRLIRIKEDQIQSANKCRLRLQVPGKPDKSGRPVSFMVVFNTPSPLSK
ISWVNRLHLAKIAQREENTPGWICAEDDWRTKAPLWCPLLACRMPVFTSKVQDCKLEAAL
HNPVQCALLGFSAASTSLPQGYLWVASGGDCAQGHVEIFSLNRTTPRSVKSFQVRAPVRC
LEFVSEPSHSDATDPALHNAAAAGNTVCVGLDDGSILVYGSMDTSAQCLLDLRNTMGSPV
LCLKHASSFLFAGLWDGTLLIYDRAPGGELWNSESYRKVLVGHEPVRTLLALDGSVWASC
GNSVSVIDVSSLSTRRFEVHQDPTVSVTHMVRAGGGVWMAFSEGSCIRLFHMETLEHLQE
INISTRSSFHSSSKKNVRVTSLLICQGLLWVGTAQGIIITLPVPKLEGIPKITGKAMTSL
NAHCGPVDFLVAISSTLSPDLLKRDSVVEAPDSACGWEERTDSSSQESLQQSNSSSFGES
KGNRRSVLLQYRIRSTMGLPGRPLTARCDESSDSSLESLEHSLEDGSIYELSDDPDMWVR
GRPCEKDGHRRDRVMSAAIISGGKGFRRLREGASEGTAELTECSLMVWQLPLTV
NT seq
3765 nt
NT seq
+upstream
nt +downstream
nt
atgagcacacctcctcagcagccgaggggcattacagaggatgacgaagaagagaaagaa
ggtcaaaaagaaacgctgaaagatggagaaatgctgcagaaagacagcaccgtttctcca
cttactaaaacgtcttctttgaggaaagactgtgagcttcaggaggatgctgggaagacg
agaactgggagaggtggtacagatggaattgtggaaagatcagaattaacgagtacgttt
ttggaggcagcgccctctggtgaatctcacaagcacaggcaatgtcagtttgacgaagat
attccatcctctagaagcccaaatcaagatgcagagaacctggctctagctgcagaactg
gtaaagacagaagaggccacggtcagcacgttagcttctcctggagtctctcgggcggat
gatattcagacgggtggctcagaggtgatctatgacgacgtgccatgtgaggacgtgtcc
cgaggagaaggaggagacatgatctatgaggatgtacagacagaggaagtccctcagggg
cccaacaacggctggagttccagcgagttcgagagctatgatgagcagtcagactctgag
aaagcagcctcccggagcaagctcgcccctgatgtacgtcgtcttcgggaatgttgtgcc
aagaccaagagggagctagcttcaaaactggggggaaagtatcagatgcatcagctcatg
agagcagcacggagtggaactaaagatggcctggagaagaccaagatggctgtcatgaga
aaagtttcctttctccagaagaaggatcactcagatgaagctgaagatgatgccggctat
ctggatgtgatagtttctgaggccaagcatcctcctgcacagctgggcccaatgccagag
ggacttagcagccatcagattgttcggcgtcacattctgggctccattgtgcaaagtgaa
aggagttacctggagtcccttaaaagaatacttcaagagtaccagagaccattgttggag
gctgagcctcgcatcctgagccggaggaagatcagacccattttcttccgtgtgcgggag
atcactcaatgccactgcatgttccagattgctttggcttcccgtgtcgcagagtgggac
gctagcgagaagattggcgacctcttcgttgcctcgttctccaagtccatggtgctagat
gtttacagcgattacgtcaataacttcaccaatgccatggccctcatcaagaaagcctgc
ttatccaaacccgccttcctggagttcctcaaaaaaaagcaatcatctagtgttgaccgg
atcactctatacggtctgatggtgaagcccattcaacgttttcctcagttcatcctcctc
ttacaggacatgctgaaaaacactccaaaaggacacgtggaccgtttgcctctgcagttg
gctctgactgagctggagaccctggctgagaagctgaatgaacaaaagcgagtggcagat
cagatcacagagacccaacagctcgcctgcagcgtcagtgaccgctcacttagcaaggtg
ctgaattcagatcaaagctctttggtcctgtgcgaaacgctgtgcgagacggtatacggc
gagcgtggccaggttctcaagtccaaggagcgcaaagtcttccttttcagcaacatgctc
gtctgtgcaaacatcaacataaagggtcccccagacatcagcagtctggttccagtaggg
cccaagtacaccatgaagtggagtgcccccttattgcaagtccaggtagttgaggtcggc
aaggacaccctctttcagcagggaggtgtcaaaaggtcaggcagctcttcaaccccaggt
aaagtggttctgggtcctcctcggctctttcaagaactcaccgaactgcagcatgacctt
tcggtggtggagcacgtgaccaccttggtgggcactttacagggcaaataccagaatctg
aacaccaccgtggctcaagactggtgcttggccctgcaaagactcatccgcattaaagag
gaccaaattcagagtgctaacaaatgccgtcttcggctacaagtccctggcaagccggac
aagtctggccgtccagtcagcttcatggtggtgttcaacacgccgagtcctctcagcaag
atctcctgggtcaaccgtcttcatctggccaagatagcacagagggaagaaaacacacct
ggctggatctgtgcagaagatgactggaggacaaaggctccactctggtgtccactgctt
gcctgtcgtatgcctgtcttcacctcaaaagtccaggactgtaagctagaagccgctctg
cacaatccagtccaatgtgctctgcttggtttctctgcagcgagcacgtcgcttcctcag
ggatatctctgggtagcgagtggcggagattgtgcacagggtcatgtggagattttctcc
ctgaatcgaactactccacgctcagtgaaaagctttcaggtacgagctcctgttcgatgt
ttggagtttgtgtctgagcccagtcattctgacgccaccgatcctgctctccataacgcc
gctgctgccgggaacacagtctgtgtcggcctggatgatggcagtattctggtctatggg
agcatggacacatcagctcagtgtcttctggacctccggaatactatgggttctcctgtc
ctgtgtctcaaacatgcttctagcttcctgttcgcaggcctgtgggacggcacgctgctc
atctatgacagagcgcctggaggtgagttgtggaactcagagtcttatcgtaaagtctta
gtgggtcatgagccagttcggacattgctggctttagacggctccgtatgggccagctgt
ggcaactccgtctcagtcatcgatgtctccagcctttccactcggaggtttgaggtccac
caggatccgacagtgagcgtcactcacatggtacgagccggtggaggggtgtggatggcg
ttttcggaaggttcctgcattcgcttgttccacatggaaaccttggaacacctacaagag
atcaacatctccacacgctcttcattccacagttcaagtaagaagaatgtgagggtcacc
agtctgttgatttgccagggcttgttgtgggtaggcacagcccagggcatcatcatcact
ctgcctgtacctaagctggaaggcatccctaaaataacaggtaaagcgatgacctcttta
aacgcccattgtggtcctgtggactttctggtggcaatcagcagcactttatccccagat
cttctgaagcgagattcggttgtggaagctcccgactcggcctgtggctgggaggagcga
actgactcctcctcccaggagtccctgcagcagtctaacagttcctcattcggggaaagc
aagggaaatcggaggagtgtacttcttcaataccgcattcgctccaccatgggcttacct
gggcggccactgaccgctcgatgtgacgagtcctcagattcatcgttagagtctttagaa
cacagcctcgaggatggctctatctacgaactcagcgacgatccagacatgtgggtcagg
ggtcgaccctgtgagaaggacggccataggagggacagggtcatgtctgcagccattatc
tctggagggaagggatttagaagacttagagagggtgcatcggagggtacggcagaattg
actgagtgctcccttatggtttggcaactgccactcactgtataa
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