Ictalurus punctatus (channel catfish): 108281075
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Entry
108281075 CDS
T04658
Name
(RefSeq) interferon regulatory factor 6 isoform X1
KO
K10154
interferon regulatory factor 6
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108281075
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ipu04147
]
108281075
Transcription factors [BR:
ipu03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
108281075
Exosome [BR:
ipu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
108281075
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF-3
IRF
Motif
Other DBs
NCBI-GeneID:
108281075
NCBI-ProteinID:
XP_017352109
Ensembl:
ENSIPUG00000017136
UniProt:
A0A2D0TB67
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All DBs
Position
21:21424675..21436438
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AA seq
577 aa
AA seq
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MTSSLYLSFGPESEAVSFTWCGVCVKSAVCVLCVYVCSCVKVCEGGRRSLFRKAFGVLFL
TSLFPASGWSLREMSVHPRRVRLKPWLVAQVDNGTFPGLVWLDREAKRFQIPWKHATRHT
AQQEEENTLFKAWAVETGKFQEGVDEPDPAKWKAQLRCALNKSREFNLIYDGTKEVPMNP
LKIYDVCDIPVPLINPGSTGSAPAYDSDGEDDDVPDTPEPPPPPYHPPVGGSPLAPPVWT
SPGSTSPLQPSPLQPSPLQPSPLQPSPMQPSPMQPSPMQPSPQVWPKKEPQDVEMNTPAA
MEIQPASNMDTQPITDVLFTTPETWISSLPMTDLEVQFYYRGKEVCPGVTVSNPQGCRLF
YGDLGPMVNQEELFGPVSLEQLRFPSTEHITNDKQRLFTNRLLDVMDRGLILEISAHDIY
AVRLCQCKVYWSGPCGPNANTPNLIERQRRVKLFCLETFLSSVIAHQRGQSPSLPQFDIH
LCFGEEWPDGRPRERKLIMVQVVPVVARIITEMFSSDGTRSFDSSSVRLQISVPDIKDNI
VTQLKQLYRLLQNHQGNEAWPLPSAGHAPLSHPLHAQ
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcatcgctgtacctgagtttcggtccagagtcggaagctgtgagctttacatgg
tgcggtgtgtgtgttaagtctgctgtgtgtgttttgtgcgtgtacgtgtgtagttgtgtg
aaggtgtgtgaaggtggacggagatctttattccgaaaagcgtttggagttttattttta
acttctctgtttcctgcttccggttggagtctcagggagatgtctgttcaccctcggcgt
gtgcggctgaagccgtggctcgttgctcaggtggataatgggacgtttccgggtcttgtg
tggctcgaccgtgaagcgaaacgcttccagatcccatggaaacacgcaacacgtcacacc
gctcaacaggaggaggagaataccctcttcaaggcttgggctgtagagacggggaagttt
caggaaggtgtagatgaaccggaccctgcaaagtggaaagctcagttacgctgcgcgctc
aacaagagccgtgagtttaacctcatctacgatggaacaaaagaagttcccatgaacccc
ctgaagatctatgatgtgtgtgacatccccgtccctctcattaaccccggttccacaggt
tctgctcctgcatacgactctgatggtgaagatgatgatgttcctgatacaccagaacct
ccaccacctccgtatcacccaccagtgggtgggtcgcctctggccccacctgtgtggact
tccccaggctccacctcccccctgcagccctcccccctgcagccctcccccctgcagccc
tcccccctgcagccctcccccatgcagccctcccccatgcagccctcccccatgcagccc
tcccctcaggtgtggcctaaaaaagagcctcaggatgtggagatgaacacaccagcagcc
atggagatccaacctgcttccaacatggacacacaaccaataactgatgtgctgttcacc
acaccggagacctggatcagctctctgcccatgactgatctggaggtgcagttttattac
cgtggtaaggaggtgtgtccaggggttacggtcagtaacccacagggctgtaggctgttt
tacggggacctggggccgatggtgaatcaggaggagctttttggacctgtgagtctggag
cagctgcgtttcccgtccactgagcacatcactaacgataaacaacgtctcttcaccaac
cgcctgctcgatgtcatggaccgcggcctcatcctagagatcagtgcacacgacatctac
gccgtgcgtctctgccagtgtaaagtgtactggtctggcccgtgtggtccaaatgccaac
acgcccaacctcatcgagcgccagcgccgagtcaagctcttctgcctcgagaccttcctc
agcagtgtcatagctcatcagcgtggtcagtctccatctctgcctcagtttgatattcac
ctgtgttttggtgaggagtggcctgatggacgtcccagagagagaaaactcatcatggtg
caggtggtccctgtggtggcgaggatcatcactgagatgttcagttcagatggaactcgc
tcctttgacagctccagtgtgcgtctgcagatttctgtcccagacataaaggacaacatc
gtcacacagctcaaacagctgtaccgcctgctgcagaatcaccagggcaacgaggcctgg
cccctcccatctgctggccacgcccccctgtcccaccccttgcatgctcagtga
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