Ictalurus punctatus (channel catfish): 124625962
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Entry
124625962 CDS
T04658
Name
(RefSeq) remodeling and spacing factor 1
KO
K11657
remodeling and spacing factor 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
124625962
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ipu03036
]
124625962
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Chromatin remodeling factors
RSF complex
124625962
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PHD
WHIM1
WSD
DDT
PHDvar_NSD
Motif
Other DBs
NCBI-GeneID:
124625962
NCBI-ProteinID:
XP_047009202
UniProt:
A0A979EJ04
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Position
4:26691665..26716413
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AA seq
1322 aa
AA seq
DB search
MAAPVAPAGLPPGFCPSFAVVCSFLERYGAALDLPEMTFPQMEGYLQDTSSVPQPLVELH
VKLLRKLGKSVTSDRWEKYLVKVCQEFNSTWAWELERKGYPETSVECKADILKYLCESQF
DDNIKFKMAVNEEDPEQMRLQPIGRDKEGLLYWFQLDQDQNVRLYVEEQDDLDGSSWRCI
VKNRNELADILELLKAKVEPAVTDEERHDGTSGSPGDEKSGGGEHKGKAAKVEAAPEEES
KPVALSTANFNSDKSVKDESQTAREMKQKGSTGPLKLEQERKEELELKAVGTETPKLDQA
PVIDNRVSTIKSLVKDEPRDSPRHWNAISVVMAPGSIKQELPAKTDSCKDKKEKPVEVFE
RAMKSDQQAKIPLKKRELKRSEGYDNSPYSHVNNTSNSNGGVSVGGIIVRNPAAMEHAGE
KKTAPPPLLTGNSEQQIQSSDSVRDGVVSPNKREQYVGFGVIMGPIERKQTFPAADGSGN
PTKDRNGLHEDQDAKSFKSAATQAENVRQSVVVRKPSISQATHHSSMSEEMTLRVEHAES
DAKVKALGGDAKERAALLLALPTDAEKEYTDGKSVIRSSTEQETVGELEDAGSAEEQAGS
RKDKATTVLDGGTGNMAGCLKAAEEKGLKSSRKKRSDKAKLKSQTGENRNKLDEEEVSSE
LQKEGIRLKIKIPLHRRTPELRRSARICKPSPKLAEIQERKHTPPSAARDSEEHVDQGDE
RALHKRDLHKKLPSDGQIKSAKGKRRHRRPRWSKLPKPRKTEVGADAACESKAERDDEKS
ELDSQHSEEAPPEDACKHCSLPNHPELILLCDRCDSGYHTACLRPPLMIIPDGEWFCPPC
QHKLLCERLEEQLQNLDTVLKKRERAERRRERLVYVGISVENIIPNPDADAEDGKQEKKK
GAKKCKNLERRSTRKRKSISYRFDDFDEAIDEAIEEEVQNSDGGDVSLGKDMAAITDQEE
KEVAKEIRQPVKTPAPRKRKRRRRLNDLDSESTLDEEESEDEFQISDSMEEDDFVVSGDD
GGSDADAVSWDGSERGSISSSVDRLPPIRKTARNGRTQRPKKRTLRSARRQRGSSEEEEE
EEEEEEEEEEMDTEGSSDVSDGDVNLSRRRSRRSQKAQINYCETSESEGSQKTSERKTNQ
APRRRRISSSNTSVVSKDSEPEEESDSRGRHRGRKRQSTREDSKQRHKRLKLKPARSTSE
EEEESDEEGDAGVSDAERRPVRKNLNRIESDEEEEDGAEKRPMRKMAGKQASRVTDCREM
SVKAHTRGSKDSMLKHNGLLPPRSSAQDEDDDDEEEEEEDEEDDLTATTDFVNFVFDSEQ
LS
NT seq
3969 nt
NT seq
+upstream
nt +downstream
nt
atggctgctccggtagctccagcgggtcttcctccgggtttctgtccgagctttgccgtc
gtgtgctcgtttttagagcgttacggtgctgctctggatctgcccgaaatgactttcccg
cagatggaaggatacttgcaggatacatcatcagttccacaacctcttgttgagctccac
gtcaagctgcttcgcaagcttggcaagtcggtgacgtcagacagatgggagaagtatctt
gttaaggtgtgtcaggagttcaacagtacctgggcgtgggagctggagaggaaaggatac
ccagaaacgtccgtggagtgcaaggccgacatccttaagtatttgtgtgaaagccagttt
gatgacaacatcaagtttaagatggcagtgaacgaggaagatccggagcagatgcgcctg
caaccgatcggcagagataaggaagggctcctgtactggttccagctggaccaagaccag
aacgtgcggctctacgtggaggagcaggacgatctggatgggtcgtcttggaggtgcatt
gtcaagaataggaatgagttagcagacattttggagctccttaaagctaaggtggaacca
gcagtgacggatgaggagcgacacgacggtacttctggcagcccaggagacgagaaaagc
ggtggaggtgaacataaaggcaaggctgctaaggtggaggctgcaccagaagaagaaagc
aagccagttgccttgagcaccgcgaatttcaattctgacaaatcggtcaaagatgaaagt
cagacagcacgtgaaatgaaacaaaaaggatctaccgggccacttaaactagaacaagag
cgaaaggaagagcttgagctgaaagcggtcggcaccgaaacccccaaactggaccaggct
cctgttatagacaacagagtgagcacgattaagagcctcgtcaaggacgagccgagggat
tcacctcgacactggaacgccatctcggtcgtcatggcgcccggctctatcaaacaggaa
cttccggcaaagacggattcctgtaaggacaagaaagagaaaccggtggaagttttcgag
agggccatgaaaagcgaccagcaggctaagataccactgaaaaagagggagctgaaaaga
agtgagggctacgacaatagtccttacagccatgtaaacaataccagtaacagcaacggt
ggtgtttctgtgggtggcataattgtacgcaacccagcagcgatggagcacgctggcgaa
aagaaaacagccccacctccgcttcttacaggaaactccgagcagcagatacagagcagc
gactcagtccgtgacggggtcgtatctccgaacaaaagagaacagtacgtaggtttcggt
gtgatcatgggcccgattgagagaaagcaaacgtttcccgcggctgatggctcgggaaat
cccacgaaggatcgaaacggactgcatgaagatcaggatgcgaagagctttaagtctgca
gcgacgcaagctgagaatgtaaggcagtctgttgtagttagaaagccgagtatttcccag
gccacgcatcattcgagcatgagcgaagagatgacgctccgagtcgagcacgcagaaagc
gacgccaaagtaaaggctcttggtggagacgcaaaggagcgagctgcgttattgctggct
ttaccgaccgatgccgaaaaggagtatactgacgggaagtcggttatcaggtctagcact
gagcaggaaacggtaggagagctggaagacgcgggtagcgcggaagagcaggcgggaagc
aggaaggataaagcgacaacggtcctcgatggaggaacgggtaatatggcgggctgtctt
aaagctgcagaagaaaaagggttgaaaagttccagaaaaaagcgctctgataaagccaag
ctcaagtcgcaaaccggggagaatcggaataaactcgacgaggaagaagtgtcctccgag
cttcagaaggagggaattcgtctcaagatcaagatcccgcttcacagacgaacccccgag
ctccgcaggtcagccagaatctgtaagcccagtcccaagctggcagagattcaggagcgg
aaacacacaccgccctctgcggcacgggactctgaggagcacgtggatcagggagacgag
agagcgcttcacaagagggacctgcacaagaaactcccctccgatggacaaatcaaatct
gctaaggggaaacgacgacacaggcggcctcgctggtcgaaacttccaaaacctcgcaaa
accgaagtaggagcagacgcagcgtgcgagagcaaagccgagcgagacgatgagaagagt
gagttggattcacagcattccgaggaagctccacctgaagatgcctgtaaacactgcagc
ctccccaaccaccctgaactgattcttctctgtgaccggtgcgacagcggctaccacacg
gcctgcctgcgccctcctctgatgatcattcctgatggagagtggttctgccctccgtgc
cagcataagctgctgtgtgagaggctggaggaacagctgcagaacctggacacggttctg
aagaaacgggaaagagctgagaggaggcgtgagcgcctggtctatgtgggaatcagcgtg
gagaacatcatacccaatccagacgctgatgcagaggacggaaaacaagagaagaaaaaa
ggtgcaaagaagtgtaagaacctagagaggagatcaacacgaaagaggaagtccattagt
tacaggtttgacgactttgatgaagcgatcgacgaagcaatagaggaagaagtgcagaat
tcagacggaggagatgtgagtcttggtaaggatatggctgctatcacagaccaggaagag
aaagaggtagctaaagagatccgacagcctgtgaaaacccctgctccacggaagaggaaa
cgccgccggaggcttaatgatttagacagcgagagcacactggatgaggaggagagcgag
gacgagtttcagatcagtgacagtatggaggaggatgattttgtggtgtctggggacgat
ggaggcagcgacgctgatgctgtatcctgggacggcagtgagagaggcagcatctccagc
agcgtagaccgcctgcctccaatcaggaaaacggccaggaacggccgaacacagagaccc
aagaagaggacactcagatcggctcgacgccagcgaggctcttcggaggaagaggaggag
gaggaagaggaagaagaagaggaggaagagatggacactgagggctccagtgatgtcagt
gacggcgatgtgaatctgagcaggcggcggtcacggcgcagtcagaaagcccagattaac
tactgcgagacgtccgagtccgaggggtcacagaaaacctcagaacggaagactaaccaa
gcgccacgtcgtcgccgaatctccagctctaacacgtctgttgtttcgaaggactctgag
cccgaggaggagtctgactcgaggggcagacaccgaggcagaaagaggcagtcgacgagg
gaagactcgaaacagaggcacaaacggctcaaactgaaaccagcaagaagtacgagcgag
gaagaggaggaatcggacgaggaaggagacgccggtgtgtccgacgcggaaaggagacca
gtccgtaaaaacctgaaccgtatcgaatcggatgaggaagaagaggacggggcggagaaa
agaccaatgagaaagatggccggaaagcaggccagcagagttacagactgcagggagatg
agtgtgaaggcacacactagaggctcgaaggactcgatgctgaagcacaacggcctgctc
cctccaagatcttcagctcaggatgaagatgatgacgatgaggaggaggaagaggaggat
gaggaggatgacctcaccgccactacagactttgttaactttgtttttgacagcgaacag
ttatcgtga
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