Ictalurus punctatus (channel catfish): 124626920
Help
Entry
124626920 CDS
T04658
Name
(RefSeq) sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Ba isoform X1
KO
K06521
semaphorin 4
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
ipu04090
]
124626920
CD molecules [BR:
ipu04090
]
Proteins
124626920
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sema
Ig_SEMA-3_4_7A
PSI
Ig_Sema4F
PSI_integrin
DUF8242
Motif
Other DBs
NCBI-GeneID:
124626920
NCBI-ProteinID:
XP_047009038
LinkDB
All DBs
Position
4:complement(21168328..21342320)
Genome browser
AA seq
851 aa
AA seq
DB search
MFLKVVNLVSSGIRMASEVWHSFSACALFLMTIFYMAASLQRAEDDVTPRLSFVYDTEDR
PAKRFSPAGVFNFTSLLLSPEDNTLYIGAREVLFALNLNDISRGQLHRNFTWSTPERKRE
ECSFKGKNLHTDCFNYIKILLRVNTTHLYVCGTYAFSPMCAHINTVDFSLVRSNTGEIVI
EDGRSRCPYNPEYKSTAIMAGGDLYAATVSNFQGNEPIIYKSLGQGTTLKTENSLNWLQD
PAFVGSAFIQESLPKGNAVGDDDKIYFFFSEAGKEFDFFDSTIVSRIARVCKGDKGGERV
LQKKWTTFLKAQLLCSLPEDGFPFNIIQDMFVLTPSKEDWKNTVFYGVFTSQWYKRASGS
SAVCTFTMNQVEEVFNGRYREVNRETQQWYTYNHPIPEPRPGACITNAARAQGIFSSLHM
PDKVLNFVKDHFLMDSVIRSQPLLVKRNVHYIQIIVHHVQAVHRAYNVLFLGTDDGRLHK
AINSKGKMHIIEELTLFLEPQPVQHIKLDAEKGVLYVSSYSGLVEIPVANCSNHQSCGEC
ILTRDPYCGWTAGQCVDVRQASSKSKILQDIEDANTATCNEALPRSHSAQIPSTRIHPCQ
VIRIPVNTFQVLPCKLRSNLAERHWEYSKGAGRFLYPSSDGGLVVVAQTDREESYECWSV
EKGFWQLMANYCVKAELQHDGTTLIGSSHTPLVPKEEPMILPGEARSSLMETKTYWNELI
VVCTLLGFSLLVFSLFVIYRNRDRMKSMLKQSECPNMQQKKARMSGKPTESLPLNGNNIP
SSVSDHKGYQTLHDNYACSTPTQECSSPENSKSFSESEQRPLHLKDTHVEISPTCPRPRV
RLGSEIKDSII
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atgttcttgaaggtagtaaatttagtaagtagcggcataaggatggcaagtgaggtatgg
cactctttctcagcatgtgcccttttcctcatgaccatcttttacatggctgcttcactg
caaagagctgaggatgatgtcacaccacgcttaagctttgtatacgatacagaggacagg
ccagccaagaggttttcacctgctggagtgttcaactttacctctctgctcctgagtcca
gaagataacacactatacataggtgcacgagaagttctgtttgcacttaacctcaatgat
atcagcagagggcaactgcaccgcaacttcacatggagcacaccagaaagaaaacgggaa
gaatgtagctttaaaggcaaaaatctacacacggactgtttcaattatattaagatttta
ctccgtgtaaacaccactcatctgtacgtctgtggaacgtatgccttcagccccatgtgt
gcacacattaacacagtggatttctctttggtgcgcagcaatacgggagagattgtgata
gaggacggacgcagtcgctgcccttataatcctgaatataaatccactgccatcatggcc
ggtggagatttgtatgctgctacagtcagtaattttcaagggaatgagcccatcatttac
aaaagccttggtcaaggcactaccctaaagacagaaaactcattgaactggcttcaagac
ccagcttttgtaggctctgctttcatccaggagagcctcccaaaaggcaatgcagtgggt
gatgatgataaaatctacttcttcttcagtgaagcaggaaaagaatttgatttcttcgac
agcaccattgtttcacgtattgctcgtgtgtgtaagggtgataagggtggagagagggtc
ctgcagaagaaatggaccacctttctgaaagcccagctcctctgctcattgcctgaagat
ggcttcccttttaacatcattcaagacatgtttgtcttgacgcccagtaaggaggattgg
aagaatactgtgttctatggtgttttcacctctcagtggtacaaaagggcatcgggcagc
tcagctgtgtgcacttttaccatgaaccaagtggaggaggtgtttaatggtcgttatcgg
gaggttaacagggaaacacagcagtggtacacctataatcacccaatcccagaacccaga
cctggagcgtgcattactaatgcagctcgggctcagggtatcttctcctcactgcacatg
ccggataaggtgctgaactttgtgaaggaccacttcttgatggatagtgtgattcgcagc
caaccgttgctggttaaacgcaacgtgcattatattcaaatcattgtgcatcatgtgcag
gctgtacacagggcctacaatgtgctttttttgggtacagatgacggcagacttcacaaa
gccattaactccaagggcaagatgcacatcatcgaggagctgacactttttctagaacca
cagcctgtgcagcacatcaagctagatgctgaaaagggtgtgttgtatgtgtcctcttac
tccggactggtggagattcctgttgctaactgctccaaccaccagagctgtggggagtgt
atactcacaagagatccttactgtggctggacagccggacagtgtgtggatgtcaggcag
gcatcatctaaaagtaaaattctgcaagatatagaagatgccaatacagctacatgtaat
gaggccctgcccaggtcccactctgcacaaattccatccacacgtattcatccatgtcaa
gtgatcagaatcccagtgaacacatttcaagtgctgccatgtaagttgcgctctaacctg
gctgaaagacactgggagtatagcaagggtgctgggcgctttctctatccaagctctgat
ggggggctagtagtagtggcccaaacagacagggaggaatcctatgaatgctggtcagta
gaaaagggcttttggcagttaatggccaattactgtgtgaaggcagaactacaacatgac
ggcaccaccctgattggtagctctcacacccccctggtgcccaaggaggagccaatgatc
cttccaggtgaagctcgctcatcactgatggagaccaaaacctactggaacgagctgatt
gtggtatgcacactgctaggcttctccctccttgtcttttctttgtttgtaatctaccgg
aatagggaccgcatgaaatccatgttaaagcagagcgagtgtcccaacatgcagcagaaa
aaggcacgaatgtcaggaaagcccactgaaagtctaccattgaatggcaacaacatcccg
tcctcagtttcagaccacaagggctaccaaacactgcatgacaattacgcttgcagtaca
ccaacacaagagtgttcttcacctgagaacagcaaaagtttctcagaatcagaacagcgc
ccattgcacctgaaggacacccatgtagagatatcacccacctgcccacgtcctcgagta
cggctcggctcagagatcaaagattccatcatttga
DBGET
integrated database retrieval system
