Ictalurus punctatus (channel catfish): 124627004
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Entry
124627004 CDS
T04658
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM35
KO
K12012
tripartite motif-containing protein 35
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ipu04121
]
124627004
Ubiquitin system [BR:
ipu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
124627004
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PRY
SPRY
zf-RING_UBOX
zf-B_box
zf-C3HC4_3
zf-C3HC4_2
zf-C3HC4_4
zf-C3HC4
zf-RING_5
zf-RING_2
U-box
Sina_RING
zf-RING_6
Prok-RING_4
DUF4200
zf-Nse
Motif
Other DBs
NCBI-GeneID:
124627004
NCBI-ProteinID:
XP_047009267
UniProt:
A0A2D0QWG0
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All DBs
Position
4:29130111..29135242
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AA seq
472 aa
AA seq
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MASRPSLTEDDFSCPVCYDIFREPLLLSCSHSICKSCLHTFWQERGAQECPICRTVSSTP
EPPLNIVLHNMCEAVLKERNRRMSVEMEGLCSIHHEVLTLFCVKDQRPLCTKCKDSTLHS
RHTVCSIREASQDLKHVLQMKLKPLHEKIRIYTDFRQSCLNTGEHIKKQSKNTETMIRRE
FEKLHQFLWDEEEARITALKEEEEQRSQTMKKKTDKITIQISSVLDTINAVEKQIQGEDL
SFLLNYNASLERTQAKLENPEKLSGVLINVAKHLSNLSFQVSEKLHGFVQYTPVSLDPNT
AHAGLIVSDDLITVAYKGELQQLPDNSERFEGYVSVIGSEGFNSGTHCWDVEVGDNTAWA
VGIISESVCKQSENHSRFGIWYIGFSNGKYGKGYAPEIVTPLRVNKTIQRIRVQVDFDKG
KVIFTDSARNICLHIFKQSFRERVFPYFYSHCKLHPLRILPAKSSMPIKIHS
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atggcttccagaccctctctgactgaagatgatttctcctgtcctgtgtgctatgacatc
ttcagggagcctttactcctgtcctgctcccacagcatctgtaaaagctgcctgcacact
ttctggcaggagcgaggagctcaagagtgtcccatctgcaggaccgtgtcctccacccct
gagcctccattgaacatcgtactgcacaacatgtgcgaggcggtactgaaggagcggaac
cggaggatgtcagtggaaatggaggggctctgcagtatacaccatgaagttcttaccctg
ttctgtgtaaaggatcagaggcctctctgcaccaagtgcaaggactccacattacacagc
aggcacactgtctgctccatacgggaagcatcacaagacctcaagcatgttctccagatg
aaactgaaacccttacatgagaagattagaatctatacggacttcagacaatcctgtctt
aatactggagagcacattaagaaacaaagcaaaaacacagagacaatgatcaggagggaa
ttcgaaaagcttcaccagtttctctgggatgaagaggaggccagaataactgcactgaaa
gaggaagaggagcagagaagtcagacaatgaagaaaaagactgacaagatcacaattcaa
atatctagtgtattggataccatcaatgccgttgagaaacagatacaaggagaagatttg
tcatttcttctgaactacaatgcttcacttgaaagaactcaagccaaactagaaaatcca
gagaaattatctggagttctgatcaatgtggcaaagcatctgagcaacctgagcttccaa
gtatcagagaagttgcacggctttgtacaatacacccctgtttcactagaccctaacact
gcccacgctggcctcatagtgtctgatgatctgatcacggtggcgtataaaggcgaactt
cagcagcttcctgataactcagagaggtttgagggttatgtgagcgtcataggctctgag
ggctttaattcaggcacacactgctgggatgttgaggttggagacaacacagcctgggcc
gtgggtatcatctcagagtctgtgtgtaagcagagcgagaaccactcacggtttggtata
tggtatataggtttctctaatggcaaatatggtaaaggatatgcacctgagatcgtgacc
cctctgcgggttaacaagacaatccagaggataagggttcaagtggactttgacaaaggc
aaagtgatctttactgactcagcccgtaacatctgtctgcacatcttcaaacaatctttt
agggagagggttttcccttacttttacagccactgcaaactccatcctctgagaatatta
ccagcaaaatcttcaatgcccattaagatacacagttag
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