Ictalurus punctatus (channel catfish): 124627014
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Entry
124627014 CDS
T04658
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 2-like isoform X1
KO
K05045
solute carrier family 6 (neurotransmitter transporter, betaine/GABA) member 12
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
124627014
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ipu02000
]
124627014
Transporters [BR:
ipu02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
124627014
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Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
124627014
NCBI-ProteinID:
XP_053534111
UniProt:
A0A9F7R2S8
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Position
4:29464924..29476072
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AA seq
564 aa
AA seq
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MVEKRKVKERGHWASKTEFFLAVAGDIVGLGNVWRFPYLCYRNGGGGFLVPYLVLAVTCG
LPLFLLETAMGQYTQEGGITCWQRICPLAKGVGYAGQLLELYSCMLYIIILAWALLYLVL
SFKFQLPWASCDNIWNTDDCIAIGSDLNWTRQANSTPAATEFWERRVLSISKGIEDVGKV
NYEIVLCLIAMWILCYFCIWKGVKSTGKVVYFTATFPYVMLLVLLIRGLTLPGAMLGVKF
YLYPDFQRLLEPQVWMEAASQIFYSYSIGVGVLTVLGSYNQYNNNCYRDCFWLCLLNSCT
SFVAGFAVFSVLGFMAHVQGVPIEDVAESGPGLAFIAYPQAVAMMPLPQLWAVCFFLMII
LLGLDTQFITMEVIITSVTDMFPRVLRRTGRREIFLLLFCVFCFFCQLIMVTEGGMYVFQ
LFDYYACNGVCIVFICVFQCLAVGWVFGAGRMSEVIEDMTGSYPNIIFRMCWKYVTPVLL
LVCFIYFLVDYQPLKYNRWYVYPDWAYALGWLMALSSMMLVPGWALGRLCTLKGSLRQRW
LYLCSPDSKLPLTQMQRARMQSAV
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atggtggaaaaaaggaaagtaaaggagagaggacattgggctagtaaaacagaattcttt
cttgctgtagcaggagacatagtgggtctgggcaatgtttggagattcccctacctctgc
tataggaatggaggggggggattcttggtgccttacctggtgcttgctgtgacctgtggt
ttgccactattccttctggagacagctatgggacagtacacacaagagggtggcatcacc
tgttggcagcgtatttgtccactggctaagggtgttggatatgccggtcagttgcttgaa
ctctatagctgcatgttatacatcataatacttgcctgggcactgctttatttggtctta
tccttcaagtttcagcttccctgggccagctgtgataacatctggaacacagatgactgt
atagctattggaagtgatcttaattggacaagacaggccaactcaacaccagcagccact
gaattttgggagagaagagtgctttctatctctaaaggcattgaagatgttggaaaggtc
aactatgagattgtcttatgtctaattgcaatgtggatcctctgctatttctgtatctgg
aaaggagtcaagtctacagggaaggtggtatattttacagcaacgttcccctatgtgatg
ctgctggtgttgctgattcgtggactaactttgcctggggccatgttgggtgttaaattc
tacctctatcctgactttcaacggctgttggagcctcaggtatggatggaggcagccagt
caaattttctactcatacagtataggtgttggtgtattgactgtactaggcagctacaac
caatacaacaacaactgctacagggactgcttttggctgtgtctgctcaacagttgcacc
agttttgtagcaggctttgcagtgttctcagttctgggcttcatggctcatgtgcaaggt
gttcctatagaggatgtggctgagtcaggtcctggcctagctttcatagcgtatcctcag
gcagttgctatgatgcctcttcctcagctgtgggctgtgtgcttcttccttatgattatt
cttctgggtctggacacacagtttattacaatggaggtgatcattacatcagtgacggac
atgtttccccgagtgctgcgtagaactggacggcgtgagatcttcctgcttctcttctgt
gttttctgtttcttctgccaactcatcatggtcacagagggggggatgtatgtgtttcag
ctgtttgactactacgcctgtaatggagtatgcattgtctttatctgtgtgtttcagtgc
ctggcagtgggctgggtcttcggcgctggacgaatgtctgaggtcattgaagatatgaca
gggtcataccctaacatcatctttcggatgtgctggaaatatgtcaccccagttctctta
ctggtatgtttcatatattttttggttgactatcagcctttgaaatacaaccgctggtac
gtgtacccagactgggcgtatgcactgggctggttgatggctctgtcttcaatgatgctg
gttcctggatgggcattgggccgcctctgcacattgaaagggagcctcagacagcgctgg
ctttacctgtgtagtcctgacagcaagttaccattgacccagatgcagagagctagaatg
caatcagcagtttga
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