Ictalurus punctatus (channel catfish): 124627946
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Entry
124627946 CDS
T04658
Name
(RefSeq) U3 small nucleolar RNA-associated protein 4 homolog
KO
K14548
U3 small nucleolar RNA-associated protein 4
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
124627946
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ipu03009
]
124627946
Ribosome biogenesis [BR:
ipu03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
124627946
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_WDR5
WD40
Beta-prop_EML_2
WD40_Prp19
WDR55
ANAPC4_WD40
Beta-prop_WDR3_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_RIG_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_Aladin
WD40_MABP1-WDR62_2nd
Beta-prop_NUP159_NUP214
EIF3I
Beta-prop_HPS5
Beta-prop_Vps41
Beta-prop_SCAP
WD40_Gbeta
PROPPIN
Beta-prop_VPS8
Beta-prop_CAF1B_HIR1
Beta-prop_IFT140_1st
Beta-prop_TEP1_2nd
Tricorn_2nd
WDR90_beta-prop_4th
Lactonase
Ge1_WD40
Beta-prop_TEP1_C
Beta-prop_ACSF4
Beta-prop_IP5PC_F
Frtz
Motif
Other DBs
NCBI-GeneID:
124627946
NCBI-ProteinID:
XP_047010824
UniProt:
A0A979EI12
LinkDB
All DBs
Position
4:9200765..9210653
Genome browser
AA seq
685 aa
AA seq
DB search
MGEFKVHRVRFFDYMPSAVHALAFAPQRERIAAARADGSVEIFNVADHLFQEKVIPGREQ
RVTEALAWVGERLFSAGLNGEIVEYDLDNHKVKYTLDAYGGPIWTIASNKQGTHLAVGCE
DGTVKLFEVCEGKIQFERNLAKQKGRVLSLSWHPSGSRIAAGMVDMIRVFNIETGQSVHR
LLVERGIGTAKNKECVVWSVVYLTDGTIVSGDSSGKVKIWDDHTGTLIKNHQVTDWDVLA
LSVSQDETSIIAGTSEGTVIQFQFLSLVLGQEEKEWIRTRTFKNHTHDVRALLEINTAIV
SGGMDTQIVMRPLLDKTVVKTTATAIRMIIFPHRSLVSCAKETGLLLFQYPTHLELWRLG
ESDGTGMPGRSLPIKKKPEKLLHLKTKGEEHICCSAVSSCGEWIAYSTEARLRLYRLHCD
NNNVSITKVSKLPKVLSSANQISFSSDSSRLFVASTRSTVHVVALSPIECKFVTTLKSKS
GSGQAIHLLASSEDGKWLASANSAHEVHVYNLKTMKVHCTVPVYSSGVSAMAIHPTTNNL
FMVHADQQLFEYSIEHKQYTDWSRMVQRNGLHRVWLERDTPVTNVTFNRKNPAHIVLQDM
YMICIIDQTLPLPGKNSLFYNQLTLQSLPEKQRKSQSHAFKVCKTYKELLFAGLMEDQSL
VVVERPLLDITCQLPPPVRRKLFAT
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgggcgagttcaaggttcatcgtgttcgattctttgactacatgccctcagctgttcat
gctttggcgttcgcgcctcagcgggagcggatcgcagcagcgagggccgatggctctgtg
gagatcttcaacgtggctgatcacttatttcaagaaaaggtgatacccgggcgagaacag
cgtgtcactgaggctctggcctgggttggagagcgtctcttcagtgcaggtttaaacggc
gagattgttgagtacgatttggacaatcacaaggtgaaatacacactcgatgcttatgga
ggtcccatttggaccatcgcaagcaacaagcaaggaactcatctggctgttgggtgtgag
gatggtactgttaaactgtttgaggtgtgtgaaggtaaaatccagtttgaaaggaatctg
gccaaacaaaaaggacgtgtcctgtcactgtcctggcatccttcaggctcgaggatagct
gcaggaatggtggatatgattcgggtctttaacattgaaacaggtcagtcagttcacagg
ctgctggtggagcgtggaataggaacagccaaaaataaggagtgtgtagtttggagtgtg
gtttacctcaccgatggcaccatcgtcagcggagattcttctgggaaggttaagatttgg
gacgatcacacggggacactgattaaaaaccaccaggtcaccgattgggacgtgctggcg
ttatcagtttcacaggatgagaccagtatcattgcaggaacatcagagggaactgtgata
caattccagttcctctctctggttctaggacaggaggagaaagagtggatccgaaccagg
accttcaagaaccacacgcatgatgtccgagctcttttggagatcaacacagccatcgtt
tcaggaggaatggacacacagattgtgatgaggcctctcctggataaaactgtagtgaag
accactgctactgccattcgcatgataatttttcctcatcggagtttagtgtcctgcgcg
aaggaaacgggtctgctgctgttccagtacccgacacatctggagctgtggagactcggg
gagagtgatggcaccgggatgcctggaagaagtttgcctatcaaaaagaaaccagagaaa
ttacttcatttaaagacaaagggtgaggagcatatttgctgcagtgctgtgtcttcatgt
ggagagtggatcgcttactctacagaggccaggttacgactgtacagactacactgtgac
aacaacaacgtcagcatcactaaggtgtccaagctcccaaaggtcctcagctcagccaat
cagatttccttctcttcagactcctcccgactgtttgtggcttcaactcgctcgactgta
cacgtggtagctctgagcccaatcgagtgcaagttcgtgaccacactcaagtcaaagtca
ggctctggccaggccattcatctgttagcaagcagtgaggatggaaaatggctggcgtca
gccaacagtgcccatgaggttcacgtgtacaacctgaagacgatgaaggtacactgtaca
gtgcctgtttatagctctggagtcagcgccatggccatccacccaacaactaacaacctg
ttcatggtgcatgcggatcagcagctgttcgagtactctatagagcataagcagtacact
gactggagtcgaatggtgcagaggaacggccttcatcgtgtgtggttggagagagacact
ccagtcactaatgtgaccttcaatcgcaaaaacccagcccacattgtactacaggatatg
tacatgatctgcatcattgatcaaaccctgcctcttcctggtaaaaattctctgttctac
aatcagctgactctgcaaagtctacctgagaaacaaaggaaatcccaaagccatgctttc
aaagtatgcaagacttacaaggagctgctgtttgccgggctgatggaggatcaatcgctg
gtggtggtggagcgccccctgttggacatcacttgtcaacttccaccaccagtcagacgg
aagttgtttgctacatag
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