Ictalurus punctatus (channel catfish): 128628746
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Entry
128628746 CDS
T04658
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM35-like
KO
K12012
tripartite motif-containing protein 35
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ipu04121
]
128628746
Ubiquitin system [BR:
ipu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
128628746
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
SPRY
zf-B_box
zf-RING_UBOX
U-box
zf-C3HC4
zf-C3HC4_3
zf-C3HC4_4
zf-C3HC4_2
zf-RING_5
zf-RING_2
zf-RING_10
zf-Nse
JetA
Prok-RING_4
Perilipin
DUF4200
HisK-N-like
Motif
Other DBs
NCBI-GeneID:
128628746
NCBI-ProteinID:
XP_053531081
UniProt:
A0A9F7QXW3
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All DBs
Position
24:complement(1706688..1711020)
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AA seq
470 aa
AA seq
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MASKFSEEEFSCPVCCEIFTDPVLLRCSHSVCKVCLQKFWETKGSRECPVCRRKSSMEEP
PRNLALKNLCETFLQERSQRSSSASETVCSLHSEKLKLFCLDDQQPVCWVCRDSKIHTNH
KFCPIDEALTDCKEELKTALKPLQEKLKIFKDCKLHWSQTAEHIKIQAQHTERQIKEEFE
KLHQVLRDEEAARIAALREEEEQKSQTMKEKIEKLSRDMSSLSDTIRGVEEEMRAEDVSF
LQNYEATVRRAQCTLQHPEELSGPLIHVAKHLDNLKFRVWEKMQDAVQYTPVTLDPNTAH
PKLIVSDDLTSVRFSDEEQKLPDNPERFDFSGCILGSEVFNSGTHCWDVEVGDCTRWLVG
VMTESAQRKGEIFSRSGIWCVWYFGGKYRTCSTPQSFTLLSVTQNLQRIRVQLDWNRGKL
SFSDPLTNTHIHTFTHTFTDKLLPFIRVGCNKSPVKILPLQCSVRVNQIS
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atggcttctaagttttcagaggaggagttctcttgtcctgtgtgctgtgaaatcttcacg
gatcctgttctcctgcgctgcagtcacagtgtgtgtaaagtgtgtttgcagaagttctgg
gagaccaaaggatccagagaatgtcctgtttgtaggaggaagtcgtctatggaggagcct
cccagaaatctggccttaaagaacctgtgtgagactttcttacaggagagaagtcagaga
tcttcatcagcgtctgaaacagtctgcagtctgcacagtgagaaactcaaactcttctgt
ctggatgatcaacagccggtgtgttgggtgtgtcgggattcaaaaatacacaccaaccat
aaattctgccccattgatgaggcattaacagactgtaaggaggagctgaaaactgctctg
aagcccctacaggagaaactgaagatctttaaagactgtaaactgcactggagtcagact
gcagaacatataaagattcaggcccaacacacagagcggcagattaaggaggagtttgag
aagcttcaccaggttctacgagatgaagaggcagccaggatagctgcactgagagaggaa
gaggagcagaagagtcagacgatgaaggagaagattgagaagctgagcagagacatgtca
tctctttcagacacaatcagaggcgtagaagaggagatgagagctgaagacgtctcgttc
ttacaaaactacgaggccacagtgagaagagctcagtgcacactgcagcatccagaggag
ctttcaggaccactgatccatgtggcaaaacatctggacaacctgaagttcagagtctgg
gagaagatgcaggacgcggtccaatacacacctgtaactctggaccccaacactgctcat
cctaaactcattgtatctgatgatctgaccagtgtgagattcagtgatgaggaacagaag
cttcctgataatccagagagatttgatttttctggctgtatcctgggctctgaggtcttt
aactcagggacacactgctgggacgttgaagtaggagactgtacacggtggttagtgggt
gtgatgacagaatctgctcagaggaagggagagatattctccagaagtggaatctggtgt
gtgtggtattttggtggtaaatatagaacatgttctacaccacagtcattcactctcctc
tcagtaacacagaatctccagaggatcagagtgcagctggactggaacagaggaaagctg
tcgttctctgaccctctcactaacacacacatacacactttcacacacacatttactgat
aaattactgccatttataagagttggttgtaataaatctcctgtaaagatcctcccactt
cagtgctctgtaagagtgaatcagatcagttag
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