Ictalurus punctatus (channel catfish): 128629323
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Entry
128629323 CDS
T04658
Name
(RefSeq) transcriptional regulator ATRX-like
KO
K10779
transcriptional regulator ATRX
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
128629323
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
128629323
03036 Chromosome and associated proteins [BR:
ipu03036
]
128629323
Transcription factors [BR:
ipu03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
128629323
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
128629323
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
ADD_ATRX
Helicase_C
ATRX_C
HDA2-3
Motif
Other DBs
NCBI-GeneID:
128629323
NCBI-ProteinID:
XP_053532829
UniProt:
A0A9F7TD74
LinkDB
All DBs
Position
28:complement(1229559..1251572)
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AA seq
1812 aa
AA seq
DB search
MSADVLRPEPVAGGSSRSGGGKLGLLINKLHTFLAVSAEQGGEHGLPGHWSGAMAKEFIE
QQQAVARASEECMQPNVSSETKTSAARSRRKPLVVTKHSGMNESDASSESGTEDALSVNS
SEPDTTSLPKGTVFVLPEPVCNEVRDEFRGPEFRSKRVKQNKDFSDKRRGGSDIERVNCT
ACGQQVNHFQRDSVYQHPALKVLICKSCFKYYMSDDISKDAEGMDEQCRWCAEGGSLIGC
DYCSNAFCKKCVLRNLGRRELSAILEEERKWYCYVCSPEPLMDLVLACDSVLQNLEKIWA
RKRVGVGGGARGKQRGGRGGCAGTGSPLGAAPSRGLCDRMQRVVDMTTSLNRSFVEFMQS
ERDEEASEEEDVDRARRLSMFRTILQDLCQAHTALQEALDRELYGGKREPQRQRAKPRQR
KPRAPRGSGVTKELVVKLTPVPLEVSVNPDASADASSAGVAAVDTAEVNAQIKEEEKPET
AEKTEGRAEGKEAEEEAKCEVQGGVAPEEEHTDDDGDDEEDEGDELEMAEENKRSPRVKT
TPRRRRSDAAHAGLEEDSDSDEVPAVLLQTAAATAAMATSEEEGGVDSDGGDPDANQEVR
KQCLFGLVKTTPPCQDRTPRKRKLKDRSSSSSSSSSSSSSAAEVADPGSKVRRTVGLPHK
VAKMTADSASSSSDPEMDSSDSDELEQKIKPLSDVTLMGSGPFQQSSGDEVDVCPAPIVL
DEDDVENRIAKQILLAEIRANLSSSSGQDDSSDDWGSRGEDEEEEDTTDRESKGKDDAGD
SEPTDNSSDSDHPTTPAQSRHHLLRCRLTPWETASKDEDDDKPADQETGRKATAINKLTD
VCSSDDRESASEESALSEVVSQSEDEDGGGVTQKDSDVDGEPHTPPREGGEDGENMEELM
STPKGRRKIRRILEVQQLAKETQEALREEEERRQRLAERDRQRRQEEEESREQGRDDSEV
MIVAETPASRLVPLVLELDDATRECLVEVDTHLLRKLKPHQREGVQFIWDSCCESIAKVK
SSPGSGCLLAHCMGLGKTLQVITFLHTVLTCKLVALQTVLVVCPLNTVLNWRTEFDKWQR
GITKKKVEVTELATVKSVGSRVNALTSWHRRGGVMIMSYEMYRILTHGGQAKYSKEQRNL
RAVLQDPGPDIVVCDEGHVLKNDATAICKAMRSIRTRRRIVLTGTPLQNNLTEYHCMVSF
VKQNLLGSLREFRNRFMNPIQNGQCADSTPSDVRLMKKRVHVLHELLAGCVQRRDYSVLT
PFLPPKREYVLLIRMTTLQCQLYRHYLQNYTAKGGGVNRLFQDFQILSLIWTHPWCLQLS
DHNRGNKGKGEEPASETMATVVHSKVANGQSTNERVLEESRDLNSAKTTPDEERSMLSGP
PAGWYREFVSNADAELLEHSGKLTLLMEILHCAELQQDKVLVFSQSLVSLDLIETFLGLA
DKAKKEGKASLYKGKQSWVRDKDYYRLDGSTTATARKKWAQEFNNVRNTRCRLFLISTRA
GSLGINLIAANRVVVFDASWNPTYDVQSMFRVYRFGQKKAVYVYRFLAQGTMEQKIYERQ
VAKQSLSSRVVDQQQIQRHFTHSHLSDLYRFQPDIHSKSHAVEPTDEVLAVLLQHCGRSI
VSFHEHDSLLDHRVEEELSVEERKEAWEEYRLEETTQTHTRASVLDLGELRRKSNKELED
MLKKGRMELQAASKNIKAQSLEFYQQEVMKHYPLLDEEKMKLKASQAYEHYERERARWME
IYQCKLAGQQKLIQYTQQLLAKREENSSSAPTTSTPLKSRFEAGASYSAPPLQPAPPHLS
RETDRTAGSLSH
NT seq
5439 nt
NT seq
+upstream
nt +downstream
nt
atgtccgccgatgtgctcaggcccgagcccgtggccgggggcagcagcaggagcggcggg
ggtaagctaggactcctgattaataagctgcacacattcctggcggtttctgcggagcag
ggcggcgaacacggcttacccgggcactggagcggggcgatggccaaagagtttattgag
cagcagcaagctgtagcacgcgcctccgaggagtgcatgcagcccaacgtgtcctcggag
acgaagacctctgcagctcgttccaggaggaagccgttggtggtgacaaagcacagcggc
atgaacgagtcggacgcgtcgtccgagagcggaaccgaagacgcgctgtccgtcaactcc
agcgaaccggatacaacctccctgcctaaaggtacagtgtttgtgttgccggagccggtg
tgtaacgaagtccgtgacgaattcagaggtccggaatttcgcagcaagcgagtgaaacag
aacaaagacttttcggacaaacggagaggaggctctgacatcgagcgagtgaactgtacg
gcctgcggtcagcaagtgaaccatttccagagggactctgtctaccagcaccctgcactc
aaagtgctcatctgcaagtcctgttttaagtactacatgagcgacgacatcagtaaagac
gccgagggcatggacgagcagtgcaggtggtgcgcggaaggaggcagtctgattggctgc
gactactgcagcaacgctttctgcaagaagtgtgtgctgcggaacctcgggcggcgggag
ctgtcggccatcttggaggaggagcgcaagtggtactgttacgtgtgcagcccggagcca
cttatggacctggtgctggcctgtgactcggtgctccagaacctggagaagatctgggct
cgcaagcgggtcggcgtagggggcggggcccgcgggaagcagaggggcgggcgcggcggg
tgtgcggggacggggtctcctctcggcgcggcgccctcccggggtctgtgcgatcgcatg
cagcgcgtggtggacatgaccacatcgctgaaccgctcgttcgtggagttcatgcagagc
gagagggacgaggaagcgagcgaagaagaagacgtggaccgagcgcggaggctgagcatg
ttccgcaccatcctgcaggacctgtgccaggcacacaccgccctgcaggaagcgctggat
cgggagttgtacgggggcaaacgtgagcctcagaggcagcgcgcgaaacctcggcagcgg
aaacctcgggctccgagaggctcgggcgtcaccaaggaactggtggtgaagctgacgccc
gtcccactagaggtgtctgtcaatcctgatgcctccgccgatgcttcttccgccggcgtc
gctgccgtagatacggcggaggtaaacgcacaaataaaggaggaggagaaaccggaaacg
gcagagaagactgagggaagggctgaaggaaaggaggcggaagaggaagcgaagtgcgag
gtgcaaggaggcgtggcgccggaggaggaacacacagacgacgacggagatgacgaagaa
gacgaaggcgatgagctggaaatggcggaggagaacaagcgctctcctcgcgtcaagacg
acgcctcggcgacggcgctcggacgctgcgcacgccggcctggaggaggactcggactct
gatgaagtgcccgccgtgctgctgcagaccgccgctgccaccgccgccatggccaccagc
gaggaggagggcggggtcgacagcgacggtggtgaccccgatgcaaaccaggaagtccga
aagcagtgcctctttggcctggtcaaaaccactcccccttgccaagatcgaactccacgc
aagcggaaacttaaagacaggtcctcttcttcatcctcctcttcctcctcgtcctcttcg
gccgccgaagtagcagatcccgggtcgaaggtccggcggacagtaggacttccccacaag
gtcgccaagatgacggcagacagcgcaagctcgtcgagcgatccggaaatggacagcagt
gactcggatgagttggagcagaagattaaaccgctgagtgacgtcacgctgatgggatcc
ggaccgttccagcaatcctctggtgacgaagtggacgtgtgccccgccccgatcgtgttg
gatgaggatgatgtggagaatagaattgctaaacagatcctgttggccgagatcagagcc
aacttatcgtccagctccggtcaggacgactcctcggacgactggggatccaggggtgag
gatgaggaggaagaggacacgacggacagggagagcaaggggaaggatgacgctggagac
agtgagccgaccgataacagctccgactcggaccatcccactacaccggcacaatcccgt
caccacctgctgcgctgccgcctgaccccgtgggagaccgcgtctaaagacgaggatgac
gataaacctgctgatcaggagaccggaaggaaggcgaccgcgataaacaagctaacagac
gtttgcagcagcgacgacagagaatctgctagcgaggagtcggcgctgagcgaggtggtc
agccaatcggaagacgaggatggcggcggcgtgacgcagaaggattccgatgttgacggg
gaacctcacacacctcctagagagggcggggaggacggagaaaacatggaggagcttatg
agcacgccgaagggccgcaggaagatccggaggattctggaggtgcagcagctggcgaag
gagacgcaggaggcgctgagggaggaggaggagaggaggcagaggctggctgagagagac
agacagcgacggcaggaggaggaggagagcagagagcaaggacgagacgactcggaggtg
atgatagtagccgagaccccggcctccagactcgttcctctggtgctagaacttgatgat
gcaacacgggaatgtctggtggaggtggatacacacctgctgagaaaactcaaacctcac
caacgagagggtgtgcagttcatttgggacagctgttgtgagtccatagcaaaggtgaag
tcctctcctggttccggctgccttctcgcacactgcatgggcctcggaaagacgctacag
gtgatcacgtttctgcacacggtgttgacgtgcaagttggtggcgctgcagacggtgctg
gtggtgtgtcctctaaacacagtgctgaactggaggacggagttcgacaaatggcagcgt
ggcatcaccaaaaagaaagttgaggtgacggagttggcgacggtgaagtcagtgggttct
cgtgtgaacgctctgaccagttggcacaggagaggtggtgtgatgatcatgagttacgaa
atgtaccgcattctcacacacggaggtcaagccaaatacagcaaagagcagaggaaccta
cgcgctgtgctgcaggaccccgggcccgacatagtggtgtgtgatgaaggccatgtcctg
aaaaacgatgcgactgccatctgtaaagctatgcgctccatacgcacacgccggcgaatc
gttttgacaggaaccccgcttcagaacaatctcacagagtatcactgcatggtgagtttt
gtgaagcagaacctcttgggttccctgcgtgagtttcggaaccgtttcatgaaccccatc
cagaacggccagtgcgccgactccacgccatccgacgtgaggctgatgaagaaacgagta
cacgtcctccacgaactcctcgctggatgtgttcagaggcgggattattccgttctgacg
cctttcctgccgcccaagagagagtatgtgctgttgatcaggatgaccacactacagtgc
caactatacagacactacctacagaactacaccgctaaaggagggggtgtgaacagatta
tttcaggattttcagatcctgagtcttatatggacgcatccgtggtgcctgcagctttct
gaccataatagagggaacaagggcaaaggggaggagcctgcttctgaaaccatggcgact
gttgtgcattctaaagtggcaaacgggcagagcaccaatgaacgtgtgttggaggagagc
agagatctcaactcagccaaaactacaccagacgaggagcgcagcatgttgagcggaccc
ccagcaggttggtacagagagtttgtgtccaacgccgacgccgagctcctggagcattct
gggaaattaacgctgctgatggagattctgcactgtgccgaactgcagcaggataaagtg
ttggtgtttagtcagtctctcgtttcactggacctgattgaaaccttcttggggttggcc
gataaggcaaagaaggagggaaaggccagtctgtataaagggaagcagtcatgggtgcgg
gataaggactattatcgtctggacggttccaccaccgcaacagcacgcaagaagtgggct
caggagttcaacaacgtcagaaacacacgctgcaggttgttcctgatctccactcgagcc
ggatcgttagggattaatctcatcgcagcaaatcgagtcgtggtgttcgacgcatcgtgg
aatccgacgtacgacgttcagagcatgttcagagtgtatcgcttcggccagaagaaggcc
gtatacgtataccgcttcctggcacagggaacgatggagcagaagatatacgagcgtcag
gtggcgaagcagtctctgtcgtcccgtgtggtggaccagcagcagatccagcggcacttc
acacacagccatctgagcgacctgtaccgcttccaacctgacatccacagcaagagccac
gccgtggagcctacggacgaggtgctggcggtgctcctgcagcactgtgggcggtccata
gtgtcgttccatgaacacgattcgctgctggaccacagggtggaggaggagctcagcgtg
gaggagaggaaggaggcgtgggaggagtaccggctcgaggagacaacacaaacacacaca
cgtgcctccgtcctggatttgggtgagctgaggaggaaaagcaataaggagctggaggac
atgttaaagaaaggtcgcatggaactgcaggcagcttcaaagaacatcaaagcccaaagt
ctggagttctaccaacaggaagtgatgaaacactaccctctgctggatgaagagaagatg
aagctgaaggcctctcaggcttatgagcactacgagagagagagagcgcgctggatggag
atttaccaatgtaaactcgccggtcagcaaaagctcattcagtacacacaacagcttctg
gctaaaagggaggagaatagcagtagtgctcccactacatccacacccctcaaatcacgg
tttgaagcaggtgcatcttattcggccccgccccttcagcccgccccgccccacctgtcc
agagaaacggatcgtacggctggttccctcagccactga
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integrated database retrieval system
