Imperialibacter roseus: RT717_11340
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Entry
RT717_11340 CDS
T09469
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
iro
Imperialibacter roseus
Pathway
iro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
iro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RT717_11340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
iro03019
]
RT717_11340
03009 Ribosome biogenesis [BR:
iro03009
]
RT717_11340
Enzymes [BR:
iro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RT717_11340
Messenger RNA biogenesis [BR:
iro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RT717_11340
Ribosome biogenesis [BR:
iro03009
]
Prokaryotic type
rRNA helicases
RT717_11340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Helicase_RecD
MKRN1_C
Motif
Other DBs
NCBI-ProteinID:
WOK09231
LinkDB
All DBs
Position
complement(2745584..2747452)
Genome browser
AA seq
622 aa
AA seq
DB search
MSIFSELGLSEPLLRVLPELGFESPSPIQQQSIPLLISEPIDFIGLAQTGTGKTAAFGLP
LLDHVDSSDLTTQALIIAPTRELCQQIAAQLVAFAKYYPNLRIQTVYGGAPIGPQIKAIK
AGVQIIVATPGRLIDLIDRKVVKIETIDIVVLDEADEMLNMGFKEDIDAILSHTPEEKAT
WLFSATMPREIRSLIKKFMKDPVEVSVQSGNVVNTNIEHQYAVIRASDKIEVLRRFIDFQ
PDMLGIVFCRTKIDTQNLAVELTQSGYHAEALHGDLSQQQRDQVMKKFKAHAVRLLIATD
VAARGIDVNDLSHVIHFSLPDDSEYYTHRSGRTARAGKTGISLALITHHDIRKIRFIEKK
LGIGMKKVQVPAVSQILNSRLEHWADKVMETEVNESLDIKIHEKVVAMFAEMNQETLLAK
LLSRQMELIGYKEVSDKNLNDDRTGDRGNDRGMERRGDRRERDGRRDRNDFGSERRSDRR
DDRPDRRSDRPDRGFDKPARAERPSRPERSDRPVRSESNDRPVRSERRERTNSETGSGPA
GKGMDRFFINIGSMDQVNKGELLKFICDQTKLRKDDIGQIQLNKSHSFFEVDAKSAGKVA
SSFKGLVIDGRELRVNKDEPKG
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgagtatattttctgagcttgggttatcagagcccttgctaagggttcttcccgaattg
gggtttgaatctccttctcccatccaacagcagtccattccgttattaataagtgagccc
atcgattttattggccttgctcaaacgggaacaggaaaaactgcggcctttggtttgccg
ctgctggaccatgtggatagtagtgatcttaccacacaggcgctgattatagcgccaaca
cgtgagttgtgccagcagattgcggcgcagcttgtagcatttgccaagtattatcccaat
ttacgtattcagacagtttatggtggagcgccaataggccctcagataaaagccataaaa
gccggagtgcagatcattgtggcaactcccggcagactcatagacctgattgacagaaag
gtcgtgaaaattgagaccattgacattgtcgttctcgatgaagcggacgaaatgctcaac
atgggcttcaaagaagacattgacgccattttgtcccacacaccggaggagaaagccact
tggcttttttcggctaccatgcctcgtgaaatcagatcattgatcaagaagttcatgaag
gatcctgtggaggtttcggtgcagtcgggtaatgtggtgaataccaatattgaacatcag
tatgccgttatcagggcgtccgacaaaatagaggtgcttcggagatttatcgacttccag
cctgacatgctgggtattgtgttttgccgaaccaagatagatacccaaaacctggctgta
gagcttacacaaagtggctatcatgctgaagctttgcatggagacctttcgcaacagcag
cgtgaccaggtgatgaagaaattcaaagcccatgccgttcgcctgctgattgctaccgac
gtggctgccaggggcattgatgtgaacgacctgagtcacgtgattcacttctctttacca
gatgattcggaatattacacgcaccgaagcggcagaacagcaagggcgggtaaaacaggt
atttctctggcactgattacgcaccatgacatccgtaaaatccgcttcattgaaaagaag
ctgggcattgggatgaagaaagtgcaggtgccggcagttagtcagatattgaacagtcgg
cttgagcactgggctgacaaagtgatggaaactgaggtaaacgaaagcctcgacatcaaa
attcacgagaaggtggtagccatgtttgctgagatgaaccaggaaaccttgcttgccaag
cttttgtcgagacaaatggagcttataggctacaaagaagtgtcggacaagaacctgaac
gatgaccgtaccggagaccggggcaatgaccggggcatggaacgcagaggtgaccgccgt
gaaagggatggcagaagggatcgcaacgatttcggcagcgaaagaagaagtgaccgcaga
gacgatcgtcccgacaggcgaagtgatcgccctgatcgtggctttgacaaaccagctaga
gctgaaaggccttcgagacccgaaagaagtgatagacctgtgaggtctgagagcaacgac
cggccagtgaggtctgagaggcgtgaaagaacaaacagtgaaactggttccgggccagca
ggcaagggcatggatcgcttttttatcaacatcggtagtatggaccaagtgaataagggc
gaattgctcaaattcatttgtgatcagacgaagctgagaaaagacgatataggacagatt
cagctcaacaagagccattcgttttttgaggtggacgcaaagagcgccggtaaagtggca
agcagcttcaaagggctggtgattgacggccgggagctgagagtgaacaaagacgaaccg
aaaggataa
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