Imperialibacter roseus: RT717_17410
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Entry
RT717_17410 CDS
T09469
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
iro
Imperialibacter roseus
Pathway
iro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
iro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RT717_17410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
iro03019
]
RT717_17410
Enzymes [BR:
iro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RT717_17410
Messenger RNA biogenesis [BR:
iro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RT717_17410
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Utp25_C
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WOK04863
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All DBs
Position
4152900..4154219
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AA seq
439 aa
AA seq
DB search
MTFENLGLVEPIQKALKAEGYVTPTPIQAQAIPHLLEGRDLLGCAQTGTGKTAAFAIPIL
QNIYTARTEQRGIKALILTPTRELAIQIDESFAAYGKYTRISHTVIFGGVSQNAQTNALR
RGVDVLIATPGRLLDLMNQGFVRLDSIQFFVLDEADRMLDMGFVHDVKKVIAKIPAKRQT
LFFSATMPPEIVKLSDSLLTNPVKVEVTPVSSTAEKIEQSLFYVEKRDKKHLLNHILENK
SIETALVFTRTKHGADRVVKDLNKEGITAEAIHGNKSQNARQRALTNFKTRKTRVLVATD
IAARGIDIDELTHVFNYELPNIPETYVHRIGRTGRAGADGKAISFCEREERPYLKDIQKL
IGKTIPVIDEHPFVNATPVPTSSEVYSSRPKSGSSGNSASFKKKWNNNGRPNNNGNRSSD
RPQRDSSQSTAMPSRFSRY
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgaaaatctagggcttgttgagcccattcagaaagccctgaaggctgaaggc
tatgttacgcctacgcctattcaggcccaagccatcccacatcttcttgaaggcagagac
ttactgggctgcgcacaaacaggcacaggaaaaaccgctgcctttgctattcctatttta
cagaacatttacactgcgagaaccgaacaaagaggtatcaaagcgcttattcttactcca
acgagggaattggcgatacagattgacgaaagctttgccgcctatggcaagtataccaga
atcagccatacagtaatatttggtggcgtgtcgcaaaatgcacaaaccaatgccctccgc
aggggtgtcgacgttcttattgctactccgggtcgtttacttgacctgatgaaccagggt
tttgttcgcctcgacagcatccagtttttcgtattggacgaagcggaccgcatgctcgac
atgggatttgtgcacgacgtaaagaaagtgatcgccaaaatccctgctaaaagacaaacg
cttttcttctcggccactatgccgcccgaaattgtaaagctgtcagacagccttcttaca
aatccggtaaaagtagaggttacgcctgtgtcttcaacagccgaaaaaatagagcagtcg
ctcttctatgtagaaaaaagagataagaagcacttgctgaaccatatcctggaaaataag
agcattgaaacagcgctggttttcactagaacaaaacacggtgccgacagggtagtgaaa
gaccttaacaaagaaggaattactgccgaagccatccacggcaacaagtcgcagaacgca
cgtcagcgtgccctcaccaacttcaaaacccgtaaaacaagggtgttggtggctaccgac
attgccgccagaggtatcgatatcgatgagctgacccacgtattcaactacgagctacct
aatattccagagacctacgtgcacagaatcggaagaacaggacgtgcaggagcagacgga
aaagcaatttccttttgcgagagagaagaaaggccttatttgaaggacatccaaaagctg
ataggaaagaccattccggtaattgacgagcacccatttgtgaatgcaacgcctgtacct
acgtccagcgaagtctattcgtcaagacccaagtctggttccagcggcaactcggcgtcg
ttcaaaaagaagtggaacaacaacggaaggccaaacaataacggaaacaggtcttcggac
aggccgcagcgggattcttctcaatcaactgcgatgccttcacggttttcgaggtattaa
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