Imperialibacter roseus: RT717_19140
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Entry
RT717_19140 CDS
T09469
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
iro
Imperialibacter roseus
Pathway
iro03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
iro00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RT717_19140 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
iro03021
]
RT717_19140 (rpoC)
03400 DNA repair and recombination proteins [BR:
iro03400
]
RT717_19140 (rpoC)
Enzymes [BR:
iro01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RT717_19140 (rpoC)
Transcription machinery [BR:
iro03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RT717_19140 (rpoC)
DNA repair and recombination proteins [BR:
iro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RT717_19140 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Biotin_lipoyl_2
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
WOK05203
LinkDB
All DBs
Position
complement(4523338..4527660)
Genome browser
AA seq
1440 aa
AA seq
DB search
MAFRKNKKITSDFSKVTISLASPESILESSHGEVTQPETINYRTYKPEMGGLFCERIFGP
VKDWECHCGKYKRIRYKGIICDRCGVEVTEKKVRRERMGHIELVVPVAHIWYFRSLPNKI
GYLLGLPTKKLDQIIYYERYVVIQPGLKAEDGINYLDFLTEDEYLDILDKIPRENQSLDD
SDPNKFIAKMGAEGLEMLLSRIELDSLSYDLRHQASTDTSQQRKAEALKRLKVVEAFRDA
RTRIENRPEWMVIRMVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIDIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVRSDGNRALKSLSDMLKGKQGRFRQNLLGKR
VDYSGRSVIVVGPELKMHECGLPKDMAAELFKPFIIRKLIERGIVKTVKSAKKIVDRKDP
VVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGDQM
AVHVPLGHEAILEASTLMLASHNIMNPANGAPIAVPSQDMVLGLYYITKGRKSTKDHPVM
GEGRTFYNAEEVIIAINEERLSKHAYIKVRTKVLNENNELETKIIETVAGRVIFNQNVPE
EVGYVDELLTKKKLQLIIGTVFKITGMARTAKFLDDIKELGFKSAYIGGLSIGLNDIKIP
EEKETMIETAKAEVDVVWNNYLMGLITDNERYNQVIDIWTRINSQLTGTLLKQLEEDDQG
FNSIYMMMHSGARGSREQIRQLGGMRGLMAKPQKNLQGSVGEIIENPILSNFKEGLDVIE
YFISTHGARKGLADTALKTADAGYLTRRLVDVAQDVVINEDDCGTLRGIVVTALKDNEDV
VEPLSERILGRVTVHDVFDPITDELIVSAGDEVTEELAARIDATSIEEVEIRSVLTCETR
LGACAKCYGRNLASGRMVEIGEAVGVIAAQSIGEPGTQLTLRTFHVGGTASNIAVDASIR
AKFDGIVEFEGLRSVKTTNDEGESINVVMGRSGEMKIKDPKSDKIFISNHVPYGAFLKVK
DGEKIEKGQELCFWDPYNAVILSEFDGTIDFDAIEEGITFKEESDEQTGHREKVIIDTKD
KTKNPAIVVNGKGDESKGYNIPVGAHLAVEKGQKVKAGQILSKIPRMTSKSRDITGGLPR
VTELFEARNPSNPAVVSEIDGVVTYGGIKRGNREIYIESKDGVKKRYLVSLSKHILVQDN
DFVRAGDALSDGAITPADILSIKGPTAVQEYLVNEIQEVYRLQGVKINDKHIEAIVSQMM
QKVVILDPGDTSFLPGQTCDKFAFREENDNILDKKVVMDAGDSENLKPGQIISSRRLRDE
NSSLKRRDLKIVEVRSAEPAVSKPSLQGITQASLDTESFISAASFQETTKVLSEASIRGK
ADHLKGLKENVIVGHLIPAGTGRRNFQRDVVGSKEEYEALTARDRDREQQTEERSFEVSK
NT seq
4323 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcagaaaaaataagaaaattacaagcgacttctctaaggttactattagtttg
gcgtctcctgaatctattctggagagctctcatggtgaggttacacaacccgaaaccatc
aactatagaacctataagcctgaaatgggtggtcttttctgcgaaagaattttcggacct
gtaaaagactgggaatgtcactgtggtaagtataaaagaatacgttataaagggattatc
tgtgaccgctgtggtgtagaggtaacagagaagaaagtacgccgtgagcgcatgggccat
attgaactggtagtgcctgttgctcatatctggtatttccgctctcttccaaataagatc
ggttatctgcttggtcttccgaccaaaaagctggatcagatcatctattatgagagatat
gtagttattcagccaggtttgaaagctgaggatggtatcaactacctcgacttccttaca
gaagacgaatacctcgatattctcgataaaattcctagagagaaccaaagtcttgacgat
tctgatcctaataagttcatcgctaagatgggtgcggaaggattggaaatgcttctttca
agaattgagcttgactcactttcatacgatcttcgccaccaggcatcaaccgatacttct
cagcagcgtaaggcggaagccttaaaaaggctgaaagtggttgaagcattcagagatgct
cgcacccgtattgaaaaccgcccagagtggatggtgatccgtatggtgccggttattcca
cctgaattgcgtcctttggttccgttggatggtggtagattcgctacttctgacttgaac
gacttgtacagaagggtaatcatcagaaacaatcgtctgaagagacttattgatatcaaa
gcaccggaagtaatccttcgtaacgagaaaagaatgcttcaggaagcggttgactcatta
tttgacaactcaagaaaagtgaacgctgtgcgttcggatggtaatagagctttgaagtca
ctttcagacatgctgaaaggaaagcagggccgtttccgtcaaaaccttctcggtaaaagg
gttgactactctggtcgttcagtaattgtggtagggccggagttgaaaatgcatgagtgc
ggtctgcctaaggatatggctgctgagcttttcaaaccattcattatcaggaaactgatt
gaaagaggtattgtaaagactgttaagtctgccaagaaaatcgtcgatcgtaaggatccg
gttgtttgggatattcttgaaaacgtattgaaaggacatcctgtgctccttaaccgtgct
ccaacactacacaggttaggtatacaggccttccagcctaagttgatagaaggaaaagcg
attcagcttcacccgctggtttgtactgccttcaacgctgactttgacggtgaccaaatg
gccgttcacgtgccacttggccacgaagcaattcttgaggcgtcaacgctgatgcttgct
tctcacaatattatgaaccctgccaatggtgctcctattgcggtgccttctcaggacatg
gtattgggtctgtactacatcaccaaaggccggaagtctaccaaggatcatcctgtaatg
ggagaaggtagaaccttttataatgccgaagaagttatcatcgctataaacgaggagaga
ctttcgaagcatgcctatatcaaagtgagaacaaaagttcttaacgagaacaatgagctt
gaaaccaaaatcatcgagacagtagctggacgggttattttcaaccagaacgttcctgaa
gaagtcggctatgtggatgagcttctgaccaagaagaaactacagttgattatcggtact
gtgttcaaaatcactggtatggctagaactgctaagttccttgatgatatcaaagagctt
ggctttaagtctgcatacatcggtggtctgtctatcggtttgaatgatatcaagattcct
gaggagaaggaaacgatgatcgaaactgcgaaagcagaagtagacgtggtttggaataac
tacctgatgggtcttatcacagataacgaacgttacaaccaggtgattgacatctggact
cgtatcaactctcagttgacaggcacactgcttaagcaactggaagaagacgatcaggga
ttcaactcgatctacatgatgatgcactcaggtgctcgtggatctcgtgagcagattcgt
cagctgggtggtatgcgtggtttgatggctaagcctcaaaagaaccttcagggttctgtt
ggtgaaatcatcgaaaacccgattctttctaactttaaggaaggtctggacgtaatcgag
tactttatctctacccacggtgctcgtaagggtcttgccgatactgcccttaaaacggct
gatgcgggctaccttacccgtcgtctggtggacgtggcacaggatgtcgtgatcaatgaa
gacgactgcggcacactgagaggtatcgttgttactgccttgaaagataatgaagacgta
gtggagcctttatctgagagaattcttggtagggtgacagtacatgatgtgttcgatccg
atcactgatgaacttatcgtgtcagcaggtgatgaagtaactgaggagttggcagccaga
attgatgctaccagcattgaagaagtagaaattcgctctgtgcttacttgtgagacccgc
ctgggcgcttgtgccaagtgttacggtcgcaaccttgcctctggccgcatggtagagata
ggggaggctgttggcgtaatcgccgctcagtcgattggtgagcctggtacacagttgaca
ctacgtaccttccacgtgggtggtacggcgtccaacattgcagtggatgccagcataagg
gctaagtttgacggtatcgttgaattcgaagggctacgttcagtgaaaactaccaatgat
gaaggagaaagcatcaatgtggtgatggggcgttccggtgaaatgaaaataaaggatccg
aaatctgataaaatattcatcagtaaccacgttccttatggtgcattccttaaggtgaaa
gacggagagaagatagaaaaaggccaggagctttgtttctgggatccttataatgctgta
attctctcagaattcgatggtactatcgatttcgatgctattgaagaaggcattactttc
aaagaggagtctgatgagcaaacaggtcacagagagaaagtaatcattgatacaaaagat
aagacgaagaaccctgccattgttgtcaatggaaagggagacgagtcgaaaggttataac
attccggtaggcgctcacttggcggttgaaaaaggccagaaggtgaaagctggacagatt
ctgtctaagatacctcgtatgacttctaagtcaagagatatcaccggtggtctgccaagg
gtaaccgaattgtttgaagcacgtaacccttccaacccggctgtggtgagtgagatcgac
ggtgtggtaacttatggaggtatcaagcgtggtaaccgtgaaatctacatcgagtctaag
gacggagtgaagaagcgttacctggtttcactttccaagcacatccttgttcaggacaac
gactttgtgagagctggcgatgccttgtctgatggtgccattacacctgcagatattctt
tctatcaaaggacctacagctgttcaggagtaccttgtaaacgaaatacaggaagtatat
cgtctgcagggtgtgaagatcaacgataagcatattgaggcaatagtgagccaaatgatg
cagaaagttgtgattctggatccgggagacactagtttcctacctggacaaacttgcgac
aagtttgctttccgtgaggagaacgataacattcttgacaagaaagtagtgatggacgct
ggtgattcggagaatcttaagccaggtcaaatcatttcttctcgcaggctgagagatgag
aattccagcctgaagagacgtgaccttaagatcgtcgaagtacgtagcgctgaacctgct
gtttccaagccatcgcttcaagggattacccaggcgtcgttggatacagaaagtttcata
tcagctgcttctttccaggagactaccaaagtattgagcgaagcctctatccgaggcaag
gccgatcacctgaaggggcttaaggaaaacgtaatcgtaggccatctgattccagccggt
acaggaagacgtaatttccaaagggacgtggttggttccaaggaagaatacgaggcactg
accgctagggatagagacagagagcaacaaactgaggaaagatctttcgaggtcagcaag
taa
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integrated database retrieval system
