Imperialibacter roseus: RT717_21205
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Entry
RT717_21205 CDS
T09469
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
iro
Imperialibacter roseus
Pathway
iro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
iro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RT717_21205 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
iro03019
]
RT717_21205 (recQ)
03400 DNA repair and recombination proteins [BR:
iro03400
]
RT717_21205 (recQ)
Enzymes [BR:
iro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RT717_21205 (recQ)
Messenger RNA biogenesis [BR:
iro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RT717_21205 (recQ)
DNA repair and recombination proteins [BR:
iro03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RT717_21205 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
RQC
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_40
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
WOK05598
UniProt:
A0ABZ0IKQ3
LinkDB
All DBs
Position
5010190..5012373
Genome browser
AA seq
727 aa
AA seq
DB search
MIASLEEQLKDKLKEVFGYSSFRGTQEAIIKNILDGRNTFVIMPTGAGKSLCYQLPALIL
DGAAIVISPLIALMKNQVDQLNAVGVNAQFLNSTLTKTEMNRVKRETLSGEVQLLYVAPE
SLTKEENIEFLKKANISFAAIDEAHCISEWGHDFRPEYRRIKQILAQISNMPVIALTATA
TPKVQIDIQKNLQMEEADIFKSSFNRENLYYEVRPKQHTKKQLVKFVKSQKGKSGIVYCL
SRKKVEEIANLLQVNDVKAAPYHAGLDAAVRIKNQDDFLNEEVDVIVATIAFGMGIDKPD
VRFVVHYDTPKSLEGYYQETGRAGRDGLEGNCIMFYSYNDIIKLEKFNKDKTVTERDNAR
VLLDEMVSYAESSLCRRKQLLHYFGESYEHDCNFCDNCLKPREKFDGEEYVQWVLRAAME
TGERFNLAHLVDVVKGTPSQYVKSYGHDALSIFGKGKELEESLIKSVVRQSLLLEFLEKD
IENIGVLKVTAKGKDFIVDPFAIKLSKDHEYDVEVTEEEEDAEKVPTTTKAYDEALFEML
RNLRKKVAKQMDLPPYVVFQDPSLEEMATIYPTTKDELAQINGVGMGKVAKFGKPFLETI
AKYVEENDIETASDVVVKSAGQKSKIKIFIIQQIDRKVDLEEIAEAKSMAMEEIINEIEH
ICYSGTKLNLEYYIDQVLDEDRQDEIIDYFMNAETDSIAVALEELGDDYSEEELRLVRIK
FLSEYAN
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgattgcgagcctggaggaacagttaaaagataagttaaaagaagtttttgggtacagc
agctttcgaggcacccaggaagcgatcatcaaaaatatacttgacggacggaataccttc
gtcatcatgccaaccggtgcgggcaagtcgctttgttaccagctgccagcactgatcctt
gatggtgcggccattgttatctcacctcttattgccctgatgaagaatcaggtcgatcaa
ttgaatgcggtgggtgtcaatgcccagttcctcaactctaccttgaccaagacggaaatg
aacagggtaaagagagagaccctgagcggagaggtgcagctactttatgtggcacctgaa
tctcttaccaaagaagaaaatattgagttcctcaaaaaagcaaacatttcttttgcggca
attgacgaggctcattgtatctcggagtggggccatgacttcaggcctgagtaccggaga
atcaagcagattctggcccaaatcagcaacatgcccgtgattgcactgaccgctactgct
actccgaaggtgcaaattgatattcagaagaacctgcaaatggaagaggccgacattttt
aagtcttctttcaacagagaaaatctatactacgaggtccgccccaagcagcacaccaaa
aagcaactggtaaagttcgtaaagtctcagaaaggcaaatctgggattgtgtactgcctg
agccgaaagaaagttgaagaaatagccaacttgctgcaggtaaatgatgtgaaagctgct
ccttatcacgccggccttgatgctgcggtacgaataaagaatcaagacgacttcctgaac
gaagaagtagatgtcattgtggcaaccattgctttcggtatgggcatcgataagccagat
gttcgctttgttgtgcattacgacactccaaaatcattggaaggatactatcaggaaact
ggtcgtgccggaagagatggtctggagggtaactgtatcatgttctacagttacaacgac
atcatcaagcttgaaaaattcaataaggacaaaactgttactgaaagagacaacgccaga
gtgctgcttgacgaaatggtttcctacgctgagtcatcactctgtagaagaaagcagttg
ctacactactttggcgaaagctacgagcatgattgcaacttttgtgacaactgccttaag
ccaagagagaagttcgacggcgaagagtatgttcaatgggtgctcagagccgcaatggaa
acgggcgaaaggtttaacctggcacacctcgtagatgtggtgaaaggcacgccctcgcaa
tacgttaaaagttacgggcatgatgctttgtccatttttggcaaaggaaaagagctggaa
gaaagcctcatcaagtcggtagtgcgtcagtctctgttgctggagtttcttgagaaagac
attgaaaatattggtgtgttgaaagtaaccgctaaaggcaaggactttattgtggatcct
tttgcgatcaagctctcaaaagaccacgaatatgacgtggaagtgaccgaggaagaagaa
gacgcagaaaaagtgcctaccacaaccaaggcctacgacgaagcactcttcgaaatgctt
agaaatcttcggaagaaggtagccaagcaaatggatctgccaccatatgtcgtttttcag
gatccttcccttgaggaaatggccactatctaccccactaccaaggacgagcttgctcag
atcaacggcgtcggcatgggcaaggtggcaaaatttggcaagccttttctcgagactatt
gccaaatacgttgaggaaaatgacattgaaactgcctctgatgtagtggttaagtcggcg
ggacagaagtcgaaaatcaagatcttcatcatacagcaaattgaccgcaaggtggatttg
gaggagattgccgaagccaaaagcatggccatggaggagatcattaacgaaattgaacac
atctgctactcaggcaccaagctcaaccttgaatactatattgatcaggtactggacgaa
gacaggcaagatgaaatcatcgactattttatgaatgctgaaacagacagcattgcagtc
gcactggaagaactgggtgacgactactcggaggaagagctaagacttgtccgtataaaa
ttcctgtcagaatacgccaattaa
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