Ignavigranum ruoffiae: M0R79_00015
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Entry
M0R79_00015 CDS
T08083
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
iru
Ignavigranum ruoffiae
Pathway
iru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
iru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M0R79_00015 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
iru03019
]
M0R79_00015 (rnr)
03016 Transfer RNA biogenesis [BR:
iru03016
]
M0R79_00015 (rnr)
Enzymes [BR:
iru01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
M0R79_00015 (rnr)
Messenger RNA biogenesis [BR:
iru03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
M0R79_00015 (rnr)
Transfer RNA biogenesis [BR:
iru03016
]
Prokaryotic type
tRNA degradation factors
M0R79_00015 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
S1_RRP5
RNase_II_C_S1
CSD
D-ser_dehydrat
CLP1_N
Motif
Other DBs
NCBI-ProteinID:
UPQ85799
LinkDB
All DBs
Position
652300..654612
Genome browser
AA seq
770 aa
AA seq
DB search
MSLSKLERDLLDFFEGHAEQAFRAGDLAALFEMTSNRQYKRLVKALNFLENQGDLHINQR
GQYQWRPSQRRVIGTYRANAKGFGFITYDENLTDLFVPQGDQGNALNGDTVEAEIIKEVD
PQTGKGSLAKIIKVVERASQQVVGEFVGFDSDERQQTGYLGCLIPQGELSKDLRVFVLPD
GIHPAASSICIAEIKSYPSREHPQRIEVLITKEIGHKDEPGVDILSILYQFNIPHEFPEE
VKREAEAIPQEIQAEDLQGRLDLRDQLIITIDGASAKDIDDAISLEKLGPDTYRLGVHIA
DVAHYVQEGSAIDREALDRGTSVYLTDRVVPMLPQRLSNGICSLLPHEERLAVSCIMDIN
GQGKVIKHQLALSVIESSYRMTYDDVNAMIEGQSEVIDQYQEIATMVEQMVEVHQILEQM
RRERGALDFDAKEAEIVVDDQGHPTEILLRERETAERLIESFMLVANETIAADYQAKHLP
FLYRIHEQPDEERMDRFAEFVTAFGIILRGNTANITPKQLQKMLVSIKDEPYETVVSMMM
LRSMQQAKYSEEPLGHYGLATRDYTHFTAPIRRYPDLLVHRLIHLYLSGKLSAKERHRWE
EKIPGIAEHTSKMERRAVDAERETEALKKAEYMEDKIGQEFDGIITSVTNFGIFVSLANT
VEGLIKLSDLKGDYYKFHQEHMMLIGERTGKVFRIGQAVRIEVEHVDVEEREIDFKLIDA
EVVEGIAVYPVKQIRDRGGRSRSDQRKRNKKTEKKPMAKKKKKFKIRKRK
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgagtctatctaaattagaacgagatttattagatttttttgaaggtcatgctgaacag
gcctttagggctggagatttggctgcattatttgaaatgacttcaaatcgacaatacaaa
cgactagtcaaagccttaaatttcttagaaaatcaaggagatttacatattaaccaacga
gggcagtaccagtggcgaccatcccaacgaagagtgattgggacttatcgtgccaatgcc
aagggttttggttttattacttatgatgagaatctaaccgatttatttgttcctcaaggc
gatcaagggaatgctttgaatggggatactgttgaagccgaaattattaaagaagttgac
ccacagaccggtaaaggctctttggctaaaattattaaagtagtcgaacgagctagtcaa
caagtggttggcgagtttgtcggttttgatagtgatgagcgtcaacagacaggttatcta
ggatgtttaataccacaaggcgaattatctaaagatttgcgcgtatttgtcttgcctgat
ggcattcacccggcagcaagtagtatctgtattgctgaaattaagtcctatcctagccgc
gaacatccgcaacgcattgaagtgttgattactaaggaaattggacataaagatgaacca
ggtgtggatattctttcaatactctatcaatttaatattcctcatgaatttcctgaagaa
gttaagcgagaagcggaagctatccctcaggagattcaagcagaagatcttcaaggtcgc
ttagatttaagagaccagttaattattaccattgatggggcttcagctaaagatattgat
gatgccatctccttggaaaaattaggaccagacacctatcggctaggtgtccatattgcc
gatgtagcccactatgttcaagaaggctcggccattgatcgcgaggccctagatcgaggc
acttcagtttatttgacggatcgtgtggttccaatgttacctcaacgattatcgaatggt
atctgttcgctgcttcctcatgaagaacgcttggcggtctcttgtattatggatattaat
ggtcagggtaaagtcattaaacatcaattggctttgtcagtgattgaatcgtcatatcgg
atgacctatgacgatgtgaatgccatgattgaaggacaaagcgaagttatcgatcaatac
caagaaattgcgacgatggttgaacaaatggttgaggttcatcagattcttgaacaaatg
cgtcgagaacgcggagccttggacttcgatgctaaagaagcagaaatagtggtcgatgac
caaggacatccgactgaaattcttttaagagaacgggaaaccgcagaacgtttaatcgaa
tcatttatgttagtggccaatgaaacgattgccgccgattaccaagccaagcatctgcca
tttctttatcggattcatgaacaacctgatgaggaacggatggatcgattcgccgagttc
gtgacggcttttggtattatattgcgcgggaacacagcgaatataacccctaaacaatta
cagaagatgttagtatccattaaggatgaaccctatgaaactgtagtttcgatgatgatg
ctacgtagtatgcaacaagccaagtatagtgaagaacccttaggacattatggactagcg
actcgagattatacccactttactgcacctattcgtcgatatccagatttgttagtacat
cgcctaattcatctgtatttaagtgggaagctatcggctaaggaacgtcaccgatgggaa
gaaaagattcccggtatcgctgaacacacctcaaagatggagcggcgagctgttgatgct
gaacgggaaaccgaagccctgaagaaagccgaatacatggaagataagattggccaagaa
tttgatggtattattacttccgtgacgaattttggtatttttgtctccttagcgaatacg
gtagaaggtttaattaaactttctgacttgaaaggggactattataaatttcatcaggag
cacatgatgttgattggtgagagaacaggtaaagtctttcgaattggccaagcagtgcgg
atcgaagtggaacatgtcgatgttgaagaaagagaaatcgatttcaagctgattgatgcc
gaagtggtcgaaggaattgctgtctatccggtgaaacaaattcgtgatcggggtggacgt
tctcgttcggaccaacggaaacgaaataaaaagaccgaaaagaaacctatggcaaagaaa
aagaagaaatttaagattagaaaacgcaaataa
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