Ignavigranum ruoffiae: M0R79_03995
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Entry
M0R79_03995 CDS
T08083
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
iru
Ignavigranum ruoffiae
Pathway
iru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
iru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M0R79_03995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
iru03019
]
M0R79_03995
03009 Ribosome biogenesis [BR:
iru03009
]
M0R79_03995
Enzymes [BR:
iru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M0R79_03995
Messenger RNA biogenesis [BR:
iru03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M0R79_03995
Ribosome biogenesis [BR:
iru03009
]
Prokaryotic type
rRNA helicases
M0R79_03995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
ResIII
NDK
Motif
Other DBs
NCBI-ProteinID:
UPQ86547
LinkDB
All DBs
Position
complement(1779866..1781371)
Genome browser
AA seq
501 aa
AA seq
DB search
MKFNELHLRKELIETLEEMGFEEPTPIQQEAIPIALEGQDLIGQAQTGTGKTAAFGLPML
NKLVDSLSSIQGLVVAPTRELAIQVQEEIFRLGKGQRARVYVVYGGSPIGKQIDRIQRLK
PDIVVGTPGRILDLIRRKVLKLDQLQTLVLDEADEMLNMGFIDDIKAIIAETPTSRQTLL
FSATMPPAIQALGSQFLNDAQIVKIKAAQMTADLIEQFFVKCRDDEKFDILTRFLEVQNP
SQAIVFCRTKKRVDEVGRGLSLRGFNAELIHGDITQQKRTSVIHEFRKGSVELLVATDVA
ARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQDGMSITFVQNSEMAYLRTIEKLTR
KDMKPLSPPTDKEALHGQVLQLIERMDDKIAHDNLDRYRNVAKQLLEHYVANDVIAALLS
EIISSSTDIEVEISPQKPLPHSHYDKKSAKSRRSHRSRHKGDKAKHGDHHQEHSSRQRDR
KGHPRKKTKKKGQFKIRQHRD
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttaacgaactacatttaagaaaagaattaattgaaaccctagaagagatgggt
tttgaagaacccactcccatccagcaagaagcgattccgattgccttagaaggacaagat
ttaattggtcaagctcagaccggaaccggaaagacggccgcttttggcttgccaatgctc
aataaattagtagattccctatcctcgattcaaggcttggttgtagcgccgacccgtgaa
ctagctattcaagtccaagaggaaattttccgtttagggaaagggcagcgtgcccgggtt
tatgtggtctatggcggatcaccgattggcaaacagattgatcggattcagcgcttgaaa
cctgatattgttgtgggaacgcctggacggattttagatttaatccggcgcaaggtgctg
aaactcgaccaactccaaaccctagtactggatgaagccgatgaaatgttgaatatgggg
tttattgatgatattaaagccattattgctgaaacacctaccagtcggcagacgctctta
ttctcggcgaccatgccccctgcgattcaagcattggggagccaatttctaaatgatgct
caaatcgttaagattaaagccgcccaaatgactgccgatttaatcgaacagttctttgtg
aaatgtcgtgacgatgagaagtttgacatcttaacccgtttcttggaagtgcagaatcct
agccaggctattgtcttttgtcggacgaagaaacgggtcgatgaagtgggccgtggctta
agcctcagaggatttaatgcagaattaattcatggcgatatcacccagcaaaaacgaacc
agtgtcattcacgaatttcgtaagggaagtgttgaattactagtggctactgatgtggct
gctcgtggcttagatatttcaggggtaacccacgtctataattatgatattccacaagac
cctgaatcctatgtccatcgtattgggcgaactgggcgagccggtcaagatgggatgtcg
attacttttgtccaaaacagcgagatggcctacttaagaacgattgagaagttaactcgc
aaggatatgaaaccattaagtcctccaactgataaagaagccctccatggacaggttctt
caattaatcgaacggatggatgataagattgctcatgataatttagatcgataccgtaat
gtggctaagcaacttttagaacactatgtagctaatgacgtgattgctgctttactaagt
gagattatttcctcatcgactgatattgaagtggagatttctccgcagaaacctttacca
cacagccattacgacaagaaatcagctaaatccagacggtcacatcgttcaagacataaa
ggggacaaagcgaaacacggagatcatcatcaggagcattcatctcgtcaacgggatcgt
aaaggacatccgcgaaagaaaaccaagaaaaaaggtcaatttaaaattcgtcaacatcgt
gattaa
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