Ignavigranum ruoffiae: M0R79_06860
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Entry
M0R79_06860 CDS
T08083
Name
(GenBank) ATP-dependent RecD-like DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
iru
Ignavigranum ruoffiae
Pathway
iru03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
iru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
M0R79_06860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
iru03400
]
M0R79_06860
Enzymes [BR:
iru01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
M0R79_06860
DNA repair and recombination proteins [BR:
iru03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
M0R79_06860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_30
AAA_19
HHH_RecD2
SH3_13
OB_YrrC
UvrD_C_2
Viral_helicase1
AAA_11
HHH_5
AAA_22
UvrD-helicase
AAA_12
nSTAND3
AAA_28
AAA_16
UvrD_C
AAA_29
Motif
Other DBs
NCBI-ProteinID:
UPQ85369
LinkDB
All DBs
Position
complement(1152829..1155285)
Genome browser
AA seq
818 aa
AA seq
DB search
MESELIQMIGQVDAIYFENPNNFYKVIRVLLDQSANPSWSADEIVMTGQFAALHLDTRYE
FWGRLIVHPKYGEQFQVVRYQQVSPTSKAGLIEYLSSDRFKGVGQVLAERIVDQLGMDAI
DKILDDASCLTNIQGLSEKTATNLFEVLKTYKGTERIFIQLSQWGFGSTLAERIYQRWTV
DTLNVIKENPYELAQEIEGISFNRADAIAEQLGVEALSLQRVVAGLYTVVAEKCLSEGDT
FVDQAEALELARQRLENSRPALIHSDLLEQALNSALDQERLFRYQAGLSIASLYLAEKGI
AHRLKDYISYNDVEIYSEAEVDQCLNQVKELTGIDYDSSQLAALKLAIHSPCSIITGGPG
TGKTTLIKGLILLHSLLHDYPLEKYIAKKEALPILLAAPTGRAAQRMSETTGLPAMTIHR
MLGYTREVRRDDAPMTEELEGSLLIIDEMSMVDTWLMHWLMQAVPYQMQIVLVGDRDQLP
SVGPGKVFEDLIESDQIPTIALQKIYRQAEDSSIIHLAHQVRQGKLPDNFLVKQTDRAFI
QASSQQVSFVIEQVVANAYVKGFDSHNLQVLAPMYKGPAGINALNIMLQNLLNPAQEKKR
QIEHFEHIYRRGDKVIQLINNTEEGVFNGDIGHITAIFTEKETESKQPEILVEFDDDREL
VYRKSDLDQLALAYCTSIHKAQGSEYDLVILPLVDLYSRLLRKDILYTAITRAQKSLVMI
GNPQSFFKAVQQEQEKRHTHLQTWLKEVFINRTTQANSIAFEQDDVEIVESNSAPSSAEI
NLRLTLDNYQEIDPMIGMGDCCPQDFLVETLPNKQNEE
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
gtggaaagtgaattaatccaaatgattggtcaagtggatgctatctattttgaaaatcca
aataatttttataaagtaattcgggttctactagatcaatcggcgaatccttcctggtct
gctgatgaaattgtgatgacgggacaatttgctgctttacatttggatacccgttacgaa
ttctggggtcgcttgattgtccatcctaaatacggagaacaatttcaagtggttcgatat
caacaagtttcgcctacgagtaaggctggtctgattgaatatttatcaagtgatcgtttt
aagggcgtgggtcaagttctggctgaaagaattgtcgatcagttagggatggatgccatt
gataaaatcctcgacgatgccagctgcctcacaaatattcaaggtctgtctgagaagaca
gcgacgaatctctttgaagtacttaaaacttacaaagggactgaacgaattttcattcaa
ttaagtcaatggggctttggctccacgctcgctgagcggatttatcaacgttggacggtg
gataccctaaatgttattaaagaaaatccatatgaattggcgcaagaaattgaagggatc
agtttcaatcgggctgatgcgattgctgaacaattaggggttgaggctttgtccttgcaa
cgagtagttgcggggctgtataccgtagtggccgaaaaatgcctgagtgaaggagatact
ttcgttgaccaagcagaagcgcttgaactggcgcgtcaacgtctagagaatagtcgaccg
gctttaatccattcagacctacttgaacaagcgctaaattcggccttggatcaggagcgc
ttattccgttatcaagcgggtttgagtatcgccagtttatatttggctgagaaggggatt
gctcatcgtttgaaagattatatttcttataacgatgttgaaatatactcagaagccgaa
gttgatcagtgtttaaatcaagtgaaagaattaaccgggattgattatgattcatctcag
ttagcagcgctcaagttagctatccattccccgtgttcgattattacgggtggacctggt
accggaaagactaccctgattaaagggttgattctcttacatagtttattacacgattac
cccttagaaaaatatattgccaaaaaagaagcccttcccatcctcctcgctgcgcctact
ggccgagcagctcagcggatgtcagaaaccaccggcttaccggcgatgacgattcatcgg
atgttaggctatacccgtgaggtacgtcgagatgatgccccaatgacagaggaattagag
gggagtctattaattattgacgagatgtccatggtggatacctggttaatgcattggttg
atgcaagcggtgccttatcagatgcaaattgttctcgttggtgatcgtgaccagttacct
tcagtcggaccaggtaaggttttcgaagatctcattgaaagtgatcagattccgacgatt
gcgctacaaaaaatctatcgccaagccgaagattcttcaattatccacctggcccatcag
gttcgtcagggcaaattacctgataatttcttagtcaaacaaacagaccgggcttttatt
caagcttccagtcaacaagtcagtttcgtcatcgaacaagtggtagccaacgcttatgtg
aaagggttcgatagtcataatctgcaagtattagcaccgatgtataaaggaccggcgggc
attaacgccttaaatataatgttacagaaccttttaaatcctgcccaagaaaaaaagcgc
caaatcgaacatttcgagcatatatatcggcgcggggataaagtgattcaattgattaat
aataccgaagaaggggtcttcaacggggatatcggccatatcacggcaatctttactgaa
aaagaaacagaatccaaacagccagaaattctagttgagtttgatgatgatcgtgagcta
gtctatcgtaaatctgatttagaccaactggccctggcatactgtacttcaattcataag
gcccaaggctcggaatatgatttagtcatcctacccttagtggacctatactcacgattg
ttacgaaaagatattctctatacggcgataactcgagcgcagaagtctttagtgatgatt
ggtaatcctcaatctttctttaaagccgttcaacaagagcaagaaaaacgtcacacccat
ttacaaacttggttaaaagaagtctttataaaccggacaactcaggcgaattcaatcgca
ttcgagcaagatgatgtagaaattgtggagtcaaattcagcaccaagctcggcggagata
aatttgcgactgaccttggataattatcaagagatagatccaatgattggcatgggcgat
tgctgtccgcaagatttcttggtagaaactttacctaataagcagaacgaggagtag
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