Ignavigranum ruoffiae: M0R79_08310
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Entry
M0R79_08310 CDS
T08083
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
iru
Ignavigranum ruoffiae
Brite
KEGG Orthology (KO) [BR:
iru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
iru03019
]
M0R79_08310
03009 Ribosome biogenesis [BR:
iru03009
]
M0R79_08310
Enzymes [BR:
iru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M0R79_08310
Messenger RNA biogenesis [BR:
iru03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M0R79_08310
Ribosome biogenesis [BR:
iru03009
]
Prokaryotic type
rRNA helicases
M0R79_08310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
MGS
Helicase_RecD
Fibritin_C
Motif
Other DBs
NCBI-ProteinID:
UPQ85640
LinkDB
All DBs
Position
827661..828974
Genome browser
AA seq
437 aa
AA seq
DB search
MDIQDLNIQHYIKAALSSLNFQSLKPVQEQVIPLALKGESLIVESQTGSGKTHSFLIPLM
DQLNSELAEVQAVVTAPSRELAEQIYQMATQINGFRPNPLRIENYVGGTDKKRQLDKLGS
QNQPQLVIGTPGRIFDLMSEHALWVQTSRVMVVDEADMTLDMGFLNTVDEIASRMPEDLQ
MMVFSATVPQALEVFLNKYMDHPQRIKIENQDVISPTIRNYLLNTKQQDRKVLTYDLLTK
GHPFLALVFTNTKEYADQLVDYLRHRGLKVAKIHGDVDSRERKRIMRQIRNLEFQYVVAT
DLAARGIDIPGISLVINTELPQDLEFFVHRVGRTGRNDLPGEAYTFYDPAEDQAIDQLED
KGIQFIPVRWKDGELVETHQRDRRQRRKVKAKEDLPEINRLVNRQKHKKVKPGYKRKLKQ
NIKKIRRAHTQSKFNKK
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atggatattcaagacttaaatatacaacattatatcaaagctgccttaagcagcctgaat
tttcaaagtttaaagcccgttcaagaacaagttattccacttgctttaaaaggagaaagt
ctgattgttgaatcgcaaaccgggtcagggaagacccatagtttcctgatacccttaatg
gaccaattaaatagtgaattggctgaagttcaagccgtagtgaccgctcccagccgcgaa
ttagccgaacaaatatatcaaatggctactcaaatcaatggatttcgtccgaatccttta
agaattgagaactatgtcggtgggactgacaaaaaacgtcaattagataaattaggcagt
caaaatcaacctcagttagtgattggtacgccagggcgaatctttgacctcatgtctgaa
catgctttatgggttcaaacgagcagagtgatggtggtagatgaagcggatatgactctg
gacatgggctttttgaatactgtcgatgaaattgcctcacgcatgccagaagatttgcaa
atgatggtcttctcggcaacggttcctcaagccttagaagtatttctaaataagtatatg
gatcatccgcaacgaattaaaatagaaaatcaagatgtcattagtccaaccatccgcaat
tacttattaaatactaagcaacaggatcgaaaagtcttaacctatgatttgttgacgaag
ggtcatccatttctagccttggtcttcaccaataccaaggaatacgcggatcaattagtt
gattatttaagacatagagggctcaaagtcgctaaaattcatggcgatgttgattccaga
gaacgtaaacggattatgcgtcaaatccgcaatttagaatttcagtatgtggtagcgacc
gatttagccgctcggggcattgatatcccgggcatatccctggtaattaataccgaattg
cctcaggacctggaattcttcgttcatcgggttggtcgtacaggacggaatgacttacct
ggagaagcttacaccttctatgaccccgcggaagatcaagctattgatcaattagaagat
aaaggcattcaatttattcctgtccgttggaaagatggtgagttggttgaaacacatcaa
cgtgaccgacgccaacgacgtaaagtaaaggcaaaagaggacctgcccgaaatcaatcgt
ttagttaatcgacaaaaacataaaaaagtcaaaccaggttataaacgaaaactcaaacaa
aatattaaaaaaattcgtcgggcccatactcaatcaaaatttaataaaaaataa
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