Ixodes scapularis (black-legged tick): 115308193
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Entry
115308193 CDS
T01131
Name
(RefSeq) spliceosome RNA helicase DDX39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
isc
Ixodes scapularis (black-legged tick)
Pathway
isc03013
Nucleocytoplasmic transport
isc03015
mRNA surveillance pathway
isc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
isc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115308193
09122 Translation
03013 Nucleocytoplasmic transport
115308193
03015 mRNA surveillance pathway
115308193
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
isc03019
]
115308193
03041 Spliceosome [BR:
isc03041
]
115308193
Enzymes [BR:
isc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115308193
Messenger RNA biogenesis [BR:
isc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
115308193
Spliceosome [BR:
isc03041
]
Complex C
Other components
EJC/TREX
115308193
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
115308193
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
DUF3256
Motif
Other DBs
NCBI-GeneID:
115308193
NCBI-ProteinID:
XP_029829852
LinkDB
All DBs
Position
Unknown
AA seq
449 aa
AA seq
DB search
MADNDLLDYEDEEEQEQTAGEPIPEVKKPTGGYVSIHSSGFRDFLLKPELLRAIVDCGFE
HPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQLDPVDGQVSVLVMCHTRELA
FQISKEYERFSKYLPSVRVGVFFGGMNISNDEKLLKSSCPHVVVATPGRALALVRSRKLQ
LKHIKHFVLDECDKMLEQLDMRRDVQEIFRNTPHEKQVMMFSATLSKDIRPVCLKFMQDP
MEVYVDDEAKLTLHGLQQYYVKLKDNEKNRKLFELLDLLEFNQVVIFVKTVQRCMALAQL
LVEQNFPAIAIHRAMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPE
DSDTYLHRVARAGRFGTKGLAVTFVSDETDAKTLNEVQDRFDVNISELPDEIDISSYSMY
RFLSIHLCTLTRATFLILSLLLCVAVEGR
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaacgatttgttggactacgaggacgaagaggagcaggagcagaccgccggg
gagcccatcccggaggtgaagaagccgactgggggctacgtgtccatccacagctccggt
ttcagggacttcttgctcaagcccgaactcctgcgcgccattgtggactgcggcttcgag
cacccttccgaagtacagcatgagtgcattccccaagcgatcctgggcatggacatcctg
tgccaggccaagtctggtatgggcaagacagccgtgtttgtgctggccactctgcagcag
ctggaccctgtggacggacaggtgtctgtgctggtgatgtgccacacccgagagctggcc
ttccagatctcgaaggagtacgagcggttctccaagtacctgccctcagtgcgggtgggg
gtgttcttcgggggcatgaacatcagcaacgacgagaagctgctgaagagcagctgcccc
cacgtggtggtggccaccccgggcagggccctggctttggtgcgctctcgcaagctccag
ctcaagcacatcaagcactttgtgctcgacgagtgcgacaagatgctcgagcagctcgac
atgcgtcgagacgtgcaggaaatcttccgcaacacaccccacgagaagcaggtcatgatg
ttcagcgccacgctgagcaaggatatccggcccgtctgcctcaagttcatgcaagacccg
atggaggtgtatgtggacgacgaggcgaagctgaccctgcacgggctgcagcagtactac
gtgaagctgaaggacaatgagaagaaccgcaagctctttgagctgctcgacctgctcgag
ttcaaccaggtggtgatctttgtgaagacggtgcagcgctgcatggccctcgcccagctg
ctggtagagcagaacttccccgccattgccatccaccgcgccatgacacaggaggagagg
ctttcccggtaccagcagttcaaggactttcagaagcgcatactggtggcaaccaacctg
tttggccgaggcatggacattgagcgggtcaacatcgtcttcaactacgacatgccagag
gactctgacacatacctccacagggttgcccgagcgggaagattcggtaccaagggcctg
gcagtgaccttcgtctccgacgaaacggatgccaagacattgaacgaggtccaagatcgc
tttgacgtcaacatctccgagctgcccgacgagattgacatttcctcctacagtatgtac
cgttttctttccatccatctctgcactcttacgagggcgacttttttaattctttctctc
ctcctttgcgttgcagttgaggggcgctga
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