Ixodes scapularis (black-legged tick): 115320639
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Entry
115320639 CDS
T01131
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
isc
Ixodes scapularis (black-legged tick)
Pathway
isc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
isc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115320639
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
isc03041
]
115320639
03009 Ribosome biogenesis [BR:
isc03009
]
115320639
Enzymes [BR:
isc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115320639
Spliceosome [BR:
isc03041
]
Complex A
U2 snRNP components
U2 related factors
115320639
Complex B
115320639
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
115320639
Ribosome biogenesis [BR:
isc03009
]
Eukaryotic type
90S particles
Helicases
115320639
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
SRP54
AAA_22
AAA_19
nSTAND3
Flavi_DEAD
AAA_30
ABC_tran
DUF6682
AAA_25
Motif
Other DBs
NCBI-GeneID:
115320639
NCBI-ProteinID:
XP_029836649
EnsemblRapid:
LOC115320639
LinkDB
All DBs
Position
Unknown
AA seq
732 aa
AA seq
DB search
MSKRHRIDVGDGPVTKKRERDLDREYDRDDRGRDRGDENCYSAPSVTMSQQLNALTGLPY
SNRYYELFRKRIALPVWEYRDKFFEYLGTHQILVLVGETGSGKTTQIPQWCVELLRKKGG
RRGVACTQPRRVAAMSVAARVAEEMDVAIGQEVGYSIRFEDCSSPKTLLKYMTDGMLLRE
AMSDPLLENYGVVLLDEAHERTLATDILMGVLKQVVTQRPDLKIVVMSATLDAGKFQNYF
DHAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHMCEEVEGDILLFLTGQEEIEE
ACKRLKREIDNLGPEVGEMKCIPLYSSLPPNLQQRIFEPPPPAKTNGAIGRKVVVSTNIA
ETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASSQQRAGRAGRTRPGKCFRL
YTEKAYKTEMQDQTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLN
YLQSLDDNGELTELGSIMAEFPLDPQLAKMLITSCDYNCSNEALSITAMLSVPQCFVRPN
EAKKAADESKMRFAHIDGDHLTLLNVYHAFKQNHEDTQWCYDNFVNYRSMKSADNVRQQL
SRIMDRFNLRRTSTEFTSKDYYVNIRKTLVSGFFMQVAHLERTGHYLTIKDNQVVQLHPS
TCLDHKPEWVVYNEFVLTTKNYIRTVTDIKPEWLIKIAPNYYDMANFPQCEAKRQLEVLV
AKMETRQYQEGF
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaagacacagaattgatgtaggagacgggcctgtaactaaaaaaagggaaaga
gaccttgacagagagtacgaccgggatgaccggggtcgagatcgaggagacgagaactgc
tacagcgctccttcagtgaccatgtctcagcagctgaatgccctgacaggactgccttat
tccaaccgctattacgagttgtttcgcaagcgcattgcccttcctgtctgggaataccgg
gacaagttcttcgagtaccttggcacccaccagatcttggtgctggttggagagactggt
tccgggaagactactcagatcccgcaatggtgtgtggaacttctgcgcaagaagggaggc
cgccggggtgtggcatgcacacagccgcgacgagtggcagccatgagcgtagctgcccgt
gtggccgaagagatggatgtggcgattggtcaggaagtcggttacagcattcgttttgag
gactgctcgtcccctaagactctcctcaagtacatgacagacggtatgctgctgcgggaa
gcaatgagtgaccccctgctggagaactatggggtggtcctgcttgacgaggcccacgaa
cgcacgcttgccacggacatcctcatgggcgtgctaaagcaggtggtgacccagcgtccc
gacctcaagattgtcgtcatgagcgccaccttggatgctggcaagttccagaactatttc
gaccatgccccactgatgaacgtgcctgggcgtacccatcccgtggagattttctacacc
cccgagcccgaacgggactacctggaggctgcaatccgtacagtcatccagatccacatg
tgtgaagaagttgaaggggacattctgctgttcctcacaggccaagaggaaattgaggag
gcctgcaagcgactgaagcgtgagattgataacctgggccccgaggtgggcgagatgaag
tgcattccactctactcgtcgctacctccaaacctacagcagcgcatctttgagccacca
ccaccggctaaaaccaacggtgccattggtcgcaaagtggttgtctctaccaatatcgcc
gagacatcactcaccatcgacggtgttgtgtttgtcattgacccgggctttgccaagcag
aaggtgtacaacccccgtattcgggtcgagtcgttgctggtgtcgcccatcagcaaggcg
agctcacagcagcgagctgggcgtgcgggccggacgcggccgggcaaatgtttccgactg
tacacagagaaggcgtacaagacggagatgcaggaccagacttatccggaaatcctacgt
tctaacctgggttctgtggtgctgcagctcaagaagctgggcatcgacgacctggtccac
tttgacttcatggacccgccagctccggagacgttgatgcgtgccctggagctgctcaac
tacctccagtcgctggacgacaacggcgagctgaccgagctgggctcgatcatggccgaa
ttccctctggacccccagctggccaagatgctcatcacttcgtgcgactacaactgctcc
aacgaggcgctctccatcactgccatgctctcagttccgcagtgctttgtgcgtcccaac
gaggccaagaaggcagccgacgagtccaagatgcgctttgctcacatcgatggcgaccac
ctgactctgctcaacgtgtaccatgccttcaagcagaaccatgaagacacccagtggtgc
tacgacaactttgtcaactaccggtcgatgaagagcgccgacaacgtgcggcaacagctg
tcccgcatcatggaccgcttcaacctgcggcggacctctacagagtttaccagcaaggac
tactacgtcaacatccgcaagacccttgtgtcaggctttttcatgcaggtggctcacctg
gagcgaacaggccactacctgaccatcaaggacaaccaagtggtgcagctgcacccatca
acatgcctggaccacaagcccgagtgggtggtctacaacgagtttgtgctcaccaccaag
aactacatccgcaccgtcactgacatcaagccagagtggctaataaagatagcccccaac
tactatgacatggcaaatttcccacagtgtgaagccaagcgtcagctggaggtactcgtt
gccaagatggagacaaggcagtatcaagaaggcttctga
DBGET
integrated database retrieval system
