Ixodes scapularis (black-legged tick): 120838809
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Entry
120838809 CDS
T01131
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
isc
Ixodes scapularis (black-legged tick)
Pathway
isc03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
isc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120838809
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
isc03021
]
120838809
03036 Chromosome and associated proteins [BR:
isc03036
]
120838809
Transcription machinery [BR:
isc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
120838809
Chromosome and associated proteins [BR:
isc03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
120838809
PBAF complex
120838809
GBAF(ncBAF) complex
120838809
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
SCHIP-1_C
BRCT_2
Motif
Other DBs
NCBI-GeneID:
120838809
NCBI-ProteinID:
XP_040064812
LinkDB
All DBs
Position
Unknown
AA seq
1166 aa
AA seq
DB search
MAVVQRKRDGGPNLKFYESAETITQFDGVKQWLHKNCKKYTQAEPPTNKGLASLAIQLIQ
FQEDAFGKSVSKPPLTRLPMKCFMDFKPGGALCHIFAAVYKFKSEQGWRRFDFQSPSRMD
RNVEMFMTVEKTLVQNKCLSLPHIYISPEVEKQLISRLKDIIKRHQGTIAETQDDASHIV
YPPAPVTDTSEEYVRLVMKRDRSALIHWWYFPDSFDTWVAGLDIDMEPDSPQTHTGPHEV
NAKWLIDLDEYNEWMNEEDYEVETDAMGRRRSPRGKYTLDELLSGEGERRDRKGIKKRKR
SPSPPLDKRKRKGGGRSPAMGKKRSFRDDESDDLTKDMEEPSPEPSVQEVSIPKSNPNQR
SSKDSELQPVKGGTLMDLDGADLDEKGDRDKGSRPGSPNGAGKSEKADAHDDNVTEQANH
IIIPSYAAWFDYNSIHAIERRALPEFFNAKNKSKTPEVYIAYRNFMIDTYRLNPTEYLTV
TACRRNLAGDVCAIMRVHAFLEQWGLVNYQVDADSRPTPMGPPSTSHFHVLADTPSGLQP
LNPPRTQQPSAAQQMLNLDKAKEVGTDGKPEEGGAAKPAIGDMLGLKMDQYAKKNAYLKH
RAAATVSREWTEQETLLLLEALEMYKDDWNKVCEHVGSRTQDECILHFLRLPIEDPYLDD
PAAGGGALGPLAFQPIPFSKAGNPIMSTVAFLASVVDPRVASSAAKAAMEEFAKIKDEVP
SALLDAHIKNVETAAAEGNVNPKAGLGMTGIAGTADKEPTEGATAAAVATTGEESEKAEE
GKEGTEPSLSAEVKVEKPSSSEENSAASVEGVASGGEAAAEEKGKAAPEEAPKEGDPEAM
DTEEPRAPETERDRLVKDAQLSTAAAAALGAAAVKAKHLAAVEERKIKSLVALLVETQMK
KLEIKLRHFEELEAIMDRERETLEYQRQQLIQERQQFHLEQLRAAEFRARQQAHAMMMAQ
QGAAAAAAAAAAPPGSGGLPPQGGAGGGGGPNPEDPGQHPRGPSSQQPPSHRTPYSYGPS
YGAAIPSGMGPQGRPVGQFPGPGEGFRVPHGGGGNPGASPGMPLSSSSVGSPGMHPSAAG
AAAAAVVAPVPAMNGGPPMAPSTPASTAPMEQQPQPPPPPPHVPCPPNVAPSPAECEPPP
PPAASGDHAQGAGPPAHTSAPTPPGI
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atggcggtcgttcaaagaaaaagggacggtgggccaaacttgaaattttacgaatcggca
gaaacaatcacgcagtttgacggcgtgaagcaatggctccacaagaactgcaaaaagtac
actcaggcagaaccgccaacgaacaagggactggcgagcttggcgattcagctcatccag
tttcaagaagatgcatttggcaaaagcgtgagcaagccgccgctgacacgacttccaatg
aaatgttttatggactttaagcctggaggtgcactttgccacatctttgctgctgtctac
aagttcaagagcgagcagggatggcgcaggtttgacttccagtctccctcccgcatggac
cgcaacgtggagatgtttatgaccgtcgagaagactctggtgcagaacaagtgcttgtct
cttccccacatctacatctcccccgaggtggagaagcagctcatctctcggctgaaggac
atcatcaagaggcaccagggcaccattgcagaaactcaagacgatgccagtcacatcgtc
taccctcccgcgcccgtgacagacacctctgaagaatacgtgcgcttggtgatgaaacga
gaccggagtgctctcatccactggtggtattttcccgacagtttcgacacctgggtggcc
ggccttgacatcgacatggagccagactcccctcagacccatactgggcctcacgaggtt
aatgcaaagtggctcattgacctggatgagtacaacgaatggatgaatgaggaggactat
gaggtcgaaacagatgccatgggccgaaggaggtctcccaggggaaagtacactttggat
gagctgctctctggtgaaggcgagcggcgcgacaggaaaggcatcaagaaacgcaagagg
tctccgtctccccctttggacaagcggaagcgcaaggggggagggcgcagcccagccatg
ggcaagaaacgatctttccgcgacgacgaatcagacgacttgaccaaggacatggaagag
ccctctcctgagcccagtgttcaggaagtctcgattcccaaaagcaacccaaaccagcgg
agcagcaaagacagcgaactgcagcctgtcaaggggggcaccctaatggatctggatgga
gcagatctggacgagaaaggtgacagagacaagggatcgaggccgggcagccccaacgga
gctggaaagagcgagaaggcagacgcgcatgatgacaatgtgacggaacaggcaaaccac
atcatcatccccagctatgctgcatggttcgactataacagcattcatgccatcgagcga
cgggccttgccagagttcttcaatgccaagaacaagtcaaagacaccagaagtgtacatt
gcgtatcgcaactttatgatcgacacatatcggttgaaccccaccgagtacctcactgtg
actgcttgccggaggaatttggctggcgacgtgtgtgccattatgagggtacatgcgttc
ctggagcagtgggggctggtgaactaccaggtggatgcggacagccgaccgactcctatg
gggcccccctccacctcccacttccacgtgctggctgacaccccctctggactgcagccc
ctcaaccctcccaggactcagcagccttcagcagcgcagcagatgctgaacctggataag
gccaaggaggtggggacggacggaaagccggaggagggtggggcggccaagccggccatc
ggggacatgctgggcctaaagatggaccagtacgccaagaagaacgcctacctgaagcac
cgggcggcggccacggtgtcccgggagtggacggagcaggagacgctgctgctcctcgag
gccctggagatgtacaaggacgactggaacaaggtgtgcgagcatgtgggcagccgcact
caggacgagtgcatcctgcactttttgcgcctgcccatcgaggacccctaccttgacgac
ccggccgccgggggtggagccctgggacccctggcgtttcagcccattccgttttccaag
gctggcaacccgatcatgtctaccgtggctttcctggcctcagtggtggaccccagggtc
gcttcgtctgcagccaaggctgccatggaggagtttgccaagatcaaggacgaagtgccg
tcggccctcttggacgcccatatcaagaacgtggaaactgcggcggccgagggcaacgtg
aatcccaaggcgggcctgggcatgaccggcattgccggcacggccgacaaggaacccacc
gaaggagcgacggcagcagcagtagcaacgacgggagaggagtctgaaaaggcggaagaa
ggcaaggagggcacagagccttctctctcggcggaggtcaaggtggagaagccgagcagt
tctgaggagaactctgcggcgtccgtcgagggagtggcctcgggcggagaggcagctgcg
gaggagaagggcaaggcggccccggaggaagcccccaaggagggcgaccccgaggccatg
gacacggaggagcccagggctcccgaaaccgagagggaccgcctggtgaaggacgcgcaa
ctgtccaccgcggccgccgccgccctgggtgcggcagccgtcaaggccaagcacctggca
gcggtggaagagcgcaagatcaagtcactggtggctttgctggtggagacccagatgaag
aagctggagatcaaactgcgccactttgaggagctcgaggccatcatggacagggagagg
gagacgctggagtaccagcgccagcagctgatccaagagcggcagcagttccacctggag
cagctgagggcggccgagttccgcgcccggcagcaggcgcacgccatgatgatggcccag
cagggggcggcggccgctgcggccgccgccgccgcaccgcccggctcagggggcctgccg
ccccaagggggcgccggcggtggaggaggccccaaccccgaggacccaggtcagcacccc
cgcggcccctcctcccagcagccgccctcgcaccgcacgccgtacagctacgggccctcg
tacggggccgcgatcccctctggcatggggcctcagggcaggcccgtggggcagttcccc
ggccccggggaagggttcagggtcccccatgggggcgggggcaaccccggggcctcccca
ggcatgcctctctcttcgtcctctgtcggatcgccgggcatgcacccctcggcagccgga
gcggcagccgcagccgtggtggcacccgtgcccgccatgaatggggggcctccgatggcc
ccttccacaccggccagcacagccccgatggagcagcagccccagccgccgccgccaccg
ccccacgtcccgtgtccccccaatgtggcgcccagcccagccgaatgcgagcctccccca
cccccggccgcgagcggagaccacgcgcaaggagccggtccccccgcccacacgagcgcc
cccacgccccccggaatctga
DBGET
integrated database retrieval system
