Ixodes scapularis (black-legged tick): 121835331
Help
Entry
121835331 CDS
T01131
Name
(RefSeq) LOW QUALITY PROTEIN: transcription elongation factor SPT5-like
KO
K15172
transcription elongation factor SPT5
Organism
isc
Ixodes scapularis (black-legged tick)
Pathway
isc03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
isc00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
121835331
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
isc03021
]
121835331
03019 Messenger RNA biogenesis [BR:
isc03019
]
121835331
Transcription machinery [BR:
isc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
121835331
RNA polymerase I system
121835331
Messenger RNA biogenesis [BR:
isc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
121835331
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW1_SPT5
KOW4_SPT5
KOW5_SPT5
KOW
KOW6_SPT5
Spt5-NGN
KOWx_SPT5
KOW7_SPT5
KOW2_Spt5
Spt5_N
CTD
GPKOW_C
DUF3912
Arabino_trans_N
Motif
Other DBs
NCBI-GeneID:
121835331
NCBI-ProteinID:
XP_042145356
LinkDB
All DBs
Position
Unknown
AA seq
1080 aa
AA seq
DB search
MSDSEGSNYSEDNESERSFQGSERAEEEEEDEEEARSEAGSEAGSGIGVAEAEEVPEGAE
EDPEPEEEPEGENLDEDEYDEEEEEEDEDEEARRKRRKKARFGGFILDEAEVDDEVEDDE
DWEEGAEDMIDPHRQTEEASSKELHSHRRLQMMLTSQKEDEIEDYYRRKYADTTATEGGY
READVELSDEIAQQTLLPGVKDPNLWMVKCKIGEEKSTVLQMMRKFIAYQYSEEPLQIRS
VVAPEGLKGYIYIEAYKHTHVKQVIQGVGNLRIGLYQQTMVPIKEMTDVLRVTKEQAQLR
PKQWVRLKRGIYRDDLAQVDYVDTAQSQVNLKLLPRVDYTRLRGALRPAAGESEKRKKSK
RPAAKLFDVDAIRAVGGEVTTDGDFLIFEGNRYSRKGFLYKAFAMSAIIAQGVKPTLSEL
EKFEEQPEGLELELGESRKEEQGHSFAPGDTVEVAEGELVHLQGKIISIDGNKITMLPRH
EDLTEPLDFQAHELKKSFKMGDHVKVIAGRFEGDTGLIVRVEDNMVVLFSDLTMHELKVL
PRDLQLCADMATGVDSLGQFQWGDLVQLDPQTVGVIVRLEKENFQVLSMNGKVVQVKHQS
VNKKCDARKAVALDSDQNQIQIRDIVKVIDGPHSGSQGVVKHIFRSFAFLHSRMMLENGG
IFVCKTRHLLLAGSTRQVTGPVMGGYTPQSPRISSPMHPSGGGGGXGGGGGGGGGRGRGG
RRDSELIGETIKITQGPYKGHIGIVKDATESTARVELHTKCQTISVDRSRIAVVGSASKG
GGGGVSTYNRTPMYGSGSQTPMYSSGSRTPMYGSQTPLYEAGSRTPHFGGGQTPVHDGSR
TPVHGAWDPTTANTPARPELDDYQLEEASPSYQPATPGYQAPETPQGPYTPQTPGMYGSD
HGFSPYQASPSPTAYQPSPSPKGYVATPSPVAFQAGTPSPSTYGGYSPMTPGAPSPFNPQ
TPGAGMEALSVEWQTMDLEVRIKDTHEDDGMIGQTGVIRGISGGMCSVFLLKEDRVVSIL
SEHLEPVVPVAKDKVKVILGEDREETGELLSIDHPEGVVKMGNGKITMQPMRYLCKMHDS
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacagcgagggcagcaactactcggaggacaacgagagcgagcgcagcttccag
gggagcgagcgagctgaagaggaggaagaagacgaggaagaagctcgcagtgaagctggc
agcgaggccggcagtggcatcggcgtggccgaggcagaagaggttcccgaaggcgccgag
gaggacccagaaccggaggaggagccagagggagagaacctggacgaggatgagtatgac
gaggaagaagaggaagaagacgaggatgaggaggcacggcgcaagcggcgcaagaaggcc
cgcttcggcggattcatcctggacgaggcggaggtggacgacgaggtggaagatgacgag
gactgggaggagggggcagaggacatgatagacccccatcgccagaccgaggaggcctcc
tccaaggagctgcactcccaccgcaggctccagatgatgctcacgtcccagaaagaagac
gagatcgaggactactaccggcgcaagtacgcggacacgactgcgaccgaaggtggctac
cgtgaggccgacgtggagctctcggacgagatcgcccagcagactctcctgccaggagtc
aaggaccccaacttgtggatggtcaagtgcaagattggggaggagaagtccacggtgctc
cagatgatgcgcaagttcattgcctaccagtattcggaagagccgctccaaatccggagc
gtggtcgccccagaggggctgaagggctacatctacatcgaggcctacaagcacacgcac
gtcaagcaagtcatccagggcgttggcaacctccgcatcggtctttaccagcaaacgatg
gttcctatcaaggaaatgacggacgtcttacgcgtcaccaaagagcaggcccagttacgt
cccaagcagtgggtccgcctcaagcggggcatctaccgcgacgacctggcccaagtcgac
tacgtagacactgcgcagagccaagtcaacctcaagctgcttccccgcgtcgactacacc
cggctccgcggtgcgctgcggcccgcggccggcgagtccgagaagcgcaagaagtccaag
cgccccgccgccaagctcttcgacgtggacgccatccgcgccgtcggcggagaagtcacc
acggacggcgacttcctcatctttgagggcaaccgctacagccgcaagggcttcctctac
aaggcattcgccatgtccgccatcatagcccagggcgtgaagcccacgctctctgagctt
gagaagttcgaggagcagccggaagggttggagctggagctgggggagagtcggaaagag
gagcagggccactcgtttgctccgggcgacaccgtggaggtggccgaaggagagctggtg
cacctgcaaggcaaaatcatctccatcgacggcaacaagatcaccatgctgccgcgccac
gaggacttgacggagccgctggacttccaggcccacgagctcaagaagtccttcaagatg
ggggaccacgtcaaggtgatcgccgggcgttttgagggagacaccgggctcatcgtgcgg
gtcgaggacaacatggtggtgctcttctcggacctcaccatgcacgagctcaaggtgctg
ccacgtgacctccagctgtgtgcggacatggccacgggggtggactctctggggcagttc
cagtggggggacctggtgcaacttgacccccagactgtgggggtgattgtgcgcctggag
aaggaaaacttccaggtgctcagcatgaatggaaaggtggttcaagtgaaacaccagtct
gtgaacaaaaagtgtgatgcgcgcaaggccgtggcactagactcggaccagaaccaaatc
cagatcagggacatcgtcaaagtcattgacggccctcattcgggatctcaaggggtagtc
aagcacatcttccggagctttgcctttctgcactctcgtatgatgctcgagaatggagga
attttcgtctgcaagacgaggcaccttctgttggccggcagtaccaggcaggtgacgggt
cccgtgatgggcggctacactccccagtccccccgcatctccagccccatgcacccctcg
ggagggggagggggcnnaggggggggagggggaggaggcggcggcaggggtcgaggggga
cgcagggacagcgagctcatcggcgagaccatcaagatcacccaggggccctacaagggc
cacattggaattgtgaaggatgccacagagtctactgccagggtggagcttcacaccaag
tgccagaccatctcggtggacaggtcgcgcattgctgtcgtcgggagtgccagcaaaggg
ggtggcggcggagtgtcgacttacaaccgtacgccaatgtacgggagcggcagccagacg
cccatgtacagcagcgggtcccggacacccatgtacggttcccagacgcccctctacgaa
gcgggcagccggacaccccatttcgggggcgggcagacgcccgtgcacgacgggagccgc
acccctgtgcacggggcctgggaccccacgacggccaacaccccggcccggcccgagctg
gacgactaccagctggaggaggcatccccctcgtaccagccggccaccccgggctaccag
gcccccgagaccccccaggggccctacaccccgcagacacctggcatgtacggctcggac
cacggcttctccccgtaccaggccagtccctcccccaccgcctatcagccgtctccgagc
ccgaagggatacgtggcgacgccgagccctgtggcattccaagcgggcacgccgtccccg
tccacgtatggcggctacagccccatgactcccggggcaccgtcccccttcaacccccaa
accccgggggcagggatggaggccctgtcagtggagtggcagacgatggacctggaggtg
cgcatcaaggacacgcacgaggacgacggcatgatcggacagacgggtgtcatacggggc
atctcgggtggaatgtgctcagtgttcctcctcaaagaagaccgcgtcgtcagcattctc
agcgagcacttggaacccgtggtgccggttgctaaagacaaggtgaaagtgatactgggc
gaggatcgggaggagactggggaactgctgagcatcgaccatcccgagggggtggtcaag
atgggcaacggcaagatcaccatgcagcccatgcgctacctctgcaagatgcacgacagc
tga
DBGET
integrated database retrieval system
