Ixodes scapularis (black-legged tick): 8026444
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Entry
8026444 CDS
T01131
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
isc
Ixodes scapularis (black-legged tick)
Pathway
isc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
isc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
8026444
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
isc03019
]
8026444
03041 Spliceosome [BR:
isc03041
]
8026444
03009 Ribosome biogenesis [BR:
isc03009
]
8026444
03016 Transfer RNA biogenesis [BR:
isc03016
]
8026444
Enzymes [BR:
isc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
8026444
Messenger RNA biogenesis [BR:
isc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
8026444
Spliceosome [BR:
isc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
8026444
Complex C
U4/U6.U5 tri-SnRNP related factors
8026444
Ribosome biogenesis [BR:
isc03009
]
Eukaryotic type
Pre-60S particles
Helicases
8026444
Transfer RNA biogenesis [BR:
isc03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
8026444
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
Death_3
nSTAND3
DNA_pol_delta_4
Motif
Other DBs
NCBI-GeneID:
8026444
NCBI-ProteinID:
XP_042145431
LinkDB
All DBs
Position
Unknown
AA seq
1033 aa
AA seq
DB search
MDDLFSVFDDAPKSSAKLLSAKTVKSEPTQNNDSTSDEAGADDFVKSVIEGKRPLDHDIE
DESIKKQKISNIWDDINPEDYLSHVHVHKVETVEACIHEVAVPEGMEYVPLKRSTDGSTA
REYPFILDPFQKEAILCLENNQSVLVSAHTSAGKTVVAEYAISLGFREKQRVIYTTPIKA
LSNQKFREFTDDFKDVGLMTGDVTINPSASCLIMTTEILRSMLYKGSEIMREVGWVVFDE
IHYMRDKERGVVWEETIILLPDNVRYVFLSATIPNAKQFAEWVCHLHKQPCHVVYTEYRP
VPLQHYIFPAGGSGLYLVVDEGGNFKEEKFNEAMTVLQNAGDAAKGDSAMKGRKGGFKGE
SNCYKIVKMIMERDYAPVIVFSFSKKECEAYATQMARLDLTTHHEKQLVDEVFRNAMDSL
SEEDQKLPQVEQVLPLLKRGIAVHHSGLLPILKETIEILFAEGLIKALFATETFAMGLNM
PARTVLFTNARKFDGKDFRWVTSGEYIQMSGRAGRRGLDDRGIVILMIDEKMSPAAGKDI
VKGLPDPINSAFHLTYNMVLNLMRVEEVNPEYILERSFFQFQNNSSIPVLYKKLQDLQTK
LDAFRIPNESEVAAYYKIRQQLASLSKELQAFLSKPQYCVPYLQAGRMIHIKNDTHDFGW
GIVISYTKKKIVAVRGEQSAREPSVIVEVLMLVSRDSAQTKVTSKVLPPPPGEKGEMQVV
PMPIDNINQISSVRLYYNQDLKSPDNRNAVLKSLQEVYERFPKGVPLVDPFEDLGIKDSG
MKEVVKKIEAFESRMYAHPLHSSPELKRLYSHYEEKMMVVKEMKEVKMELKKAKSLLQMD
ELKCRKRVLRRLGYCTAADVMEIKGKVACEISSADELLVTEMIFNNMFNDLDVHQATALL
GCLVFQEKSNEMPNLTEELSGPLRQMQDMARRIARVTKDAKLCVDEDRYIESFKPHLMDV
IYSWSKGASFAQVCKMTDVFEGSIIRCMRRLEELLRQLVQAAKCIGNTELENKFSEAVKL
MKRDIVFAASLYL
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atggacgacttgtttagtgtttttgacgatgcgccgaaatcatctgctaaactcttgtcc
gctaagacggtcaagtctgaaccgactcagaacaatgattcaacatctgacgaagctggt
gccgacgactttgtcaagtctgtgatcgaaggaaagcgaccactggaccacgacatcgaa
gatgaatcaatcaagaagcagaagatttccaacatatgggacgacataaaccctgaagac
tacctgtctcacgtgcacgtgcacaaggtcgagacagtcgaagcatgcatacacgaggtc
gcagtgcccgaggggatggagtatgtccccctcaagcgcagcacggacggctcgacggcg
cgcgagtaccctttcatcctcgatccgtttcaaaaggaggccatcctctgcctggagaac
aaccagagcgtgctggtgtccgcccacacttcggccggaaagaccgttgtggccgagtac
gccatctcactgggcttcagagaaaagcagcgggtcatttacaccactccgatcaaggct
ctcagcaaccagaagtttagggagtttacggacgacttcaaggacgttggcctcatgacg
ggcgatgtcaccatcaaccctagcgccagctgcctcatcatgacaacagagatcttgagg
agcatgttgtacaagggctccgagatcatgcgggaggtcgggtgggtcgtcttcgacgag
attcattacatgagagacaaggagcgaggcgtggtgtgggaagagacgatcatcctgctg
ccagacaatgtgcgctatgtgttcctttcggccaccatccccaacgccaagcagtttgcg
gagtgggtctgccacttgcacaagcagccctgtcacgtcgtctacacggaataccggccg
gtcccgcttcagcactacatcttccctgcgggaggcagcggactttacctcgtcgtggac
gaagggggaaacttcaaggaggagaaattcaacgaggccatgacggtcctccaaaatgcc
ggcgacgcggccaagggcgactctgccatgaaagggcgcaagggcggattcaaaggagag
tccaactgctacaagattgtcaagatgatcatggaacgcgactacgctcccgtcatcgtc
ttcagcttcagcaagaaggagtgcgaggcctacgccacccagatggccaggctggacctg
acaacccatcacgaaaagcaactggtggacgaggtcttccgaaacgccatggactccctt
tccgaagaagaccagaaattgcctcaggtcgaacaagtgctcccgttgctgaagcgaggc
attgcagtccatcactctggcctgcttcccattctcaaggagaccatagaaatcttgttt
gctgaaggactcatcaaggccctgtttgccacggaaacatttgccatggggctgaacatg
cctgcacgaaccgtgttgttcacaaacgcacgcaaattcgacgggaaggactttcgatgg
gtgacctctggagagtacattcagatgagcggtcgggccggcaggcgcggcctggacgac
cgcggcattgtcatcctcatgatcgatgagaagatgagccctgctgcagggaaggacatc
gtcaagggcctccccgaccccatcaacagcgcgttccacctgacgtacaacatggtgctg
aacctgatgcgcgtggaggaggtgaacccggagtacatcctggagcgctccttcttccag
ttccagaacaactcctccatccccgtgctgtacaagaagctgcaggacctgcagacgaag
ctggacgccttcaggatccccaacgagtcggaggtggcggcctactacaagatccggcag
cagttggcgtcgctctccaaagagctgcaggccttcctttccaaaccccagtactgcgtg
ccctaccttcaggctggccggatgatccacataaagaacgacacgcacgactttggctgg
ggtatcgtcatctcgtacaccaagaagaaaattgtcgcagtgaggggagagcagtctgca
agagagccctcagtcattgtggaagtgctgatgctggtctccagggacagtgcccagacc
aaggtcacctccaaggtccttcctcctcccccgggggagaaaggggagatgcaggttgtg
cccatgcccattgacaacatcaaccagatcagcagcgtgcgactttactacaaccaggac
ctgaagtcgcccgacaaccgtaatgccgtgctcaagtcactccaggaggtctacgaacgc
ttccccaagggcgtccctctcgtcgaccctttcgaggacctgggcatcaaggacagcggc
atgaaggaagtggtcaagaaaatcgaggccttcgagagccggatgtacgcccaccctctc
cactcgagtccggaactcaagcggctctactcgcactatgaagaaaagatgatggtggtg
aaggagatgaaggaggtaaagatggagctgaagaaggccaagtctcttcttcaaatggac
gagctcaagtgcaggaagcgagtgctgcgccggctcggctactgcactgccgcagacgtc
atggagatcaaggggaaagtggcttgcgagatcagcagtgccgacgagctgctggtgacg
gagatgatcttcaacaacatgttcaacgacctggacgtgcaccaggcgacggcactcctc
ggctgcctcgtcttccaggagaagtccaacgagatgccaaacctgaccgaggagctctcc
ggtccactccgacagatgcaggacatggcacgacgcatagccagggtgaccaaggacgcc
aagctgtgtgtggacgaggaccgctacatcgagtcgttcaagccccacctcatggacgtc
atctactcctggagcaaaggggcatcgttcgcgcaggtctgcaagatgacggacgtcttc
gaaggcagtatcattaggtgcatgagaagactagaagagctgctgaggcagctggtgcaa
gctgccaagtgcatcgggaacaccgaactcgagaacaagttctcagaagccgtcaagctc
atgaagagggacatcgtcttcgcggcaagcttgtatttatga
DBGET
integrated database retrieval system
