Ixodes scapularis (black-legged tick): 8028961
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Entry
8028961 CDS
T01131
Name
(RefSeq) probable ATP-dependent RNA helicase DDX23
KO
K12858
ATP-dependent RNA helicase DDX23/PRP28 [EC:
5.6.2.7
]
Organism
isc
Ixodes scapularis (black-legged tick)
Pathway
isc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
isc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8028961
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
isc03041
]
8028961
Enzymes [BR:
isc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
8028961
Spliceosome [BR:
isc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
8028961
Complex C
U5 SnRNP specific factors
8028961
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DDX23
ResIII
HEM4
AAA_19
Motif
Other DBs
NCBI-GeneID:
8028961
NCBI-ProteinID:
XP_029837266
LinkDB
All DBs
Position
Unknown
AA seq
789 aa
AA seq
DB search
MASDDDSRVQPKSAVNSAEPKRPSDRGREREKRHRSRSKERRKRSRSREKRSRSRSREKK
KDREKGRDKDRRKDRDRPKDKENKDRSKDGEEDEEESGKVKKEPLSLEELMAKKKAEEEA
RSKPVFLTKEQREAEAIKRRQEEIQGQRQRQEEERKKRQQFFEQAKHSTDDIPDRMLDRR
AIREKRERERERERFREDEDEDDRDKVREHKDKEKEFEAIKERYLGIIKKKRRVRRLNDR
KFVFDWDASEDTAVDYNPIYKDKHTVQFYGRGHIGGIDLKAQKKEQSKFYGELLERRRTQ
AEKDQEVLRLKKVKRKEEKQKWDDRHWSHKSLEEMQERDWRIFREDFNITIKGGRIPNPL
RKWNESPLPSSILDIIKELGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLL
VWITSLPKIVRQEDADQGPYAIIMAPTRELAQQIEEETIKFAKMLEIRTVAVIGGLSREE
QGFRLRLGCEIVIATPGRLIDVLENRYLVLSRCTYIVLDEADRMIDMGFEGEVQKILDFM
PVTNQKPDTEEAEDEEKLLANFASKHKYRQTVMFTATMPPAVERLARSYLRRPAIVYIGS
IGKPVERTEQVVHLVTESEKRRKLVELLNRGVEPPVIIFVNQKKGADVLAKGLEKMGFNA
CTLHGGKGQEQREYALASLKNGAKDILVATDVAGRGIDIRNVSMVINYDMAKSIEDYTHR
IGRTGRAGLTGKAVSFVTKEDSHLFYDLKQLIMSSPVSTCPPELANHPDAQHKPGTVVTK
KRREEKIFA
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atggcttcggatgacgacagccgcgtgcagcccaaatcggccgtgaattcggcggagccc
aaaagaccctcggatcgcggccgggaacgcgagaagcgccacaggtctcggagcaaagaa
cgcaggaagcgctccagaagcagagagaaacggtcccggtcccgcagcagggagaagaag
aaggaccgagagaaggggcgcgacaaggacaggcgtaaggacagagaccgtcccaaggac
aaggagaacaaggacaggtctaaggatggggaggaggatgaggaggagtctgggaaggtg
aagaaggagccactctccctggaggaactcatggccaagaagaaggccgaggaggaggcc
cgcagcaagcccgtgttcctgacgaaagagcagagggaggccgaggcaatcaagagacgc
caggaagagattcaggggcagagacagaggcaggaggaggagaggaagaagcggcagcag
ttctttgagcaggccaagcatagcacagacgacattcccgaccggatgctggacaggcgg
gcaatccgagagaagcgggagcgagagagggagagggagcgcttccgggaggatgaggat
gaggacgacagggacaaggtgcgggagcacaaagacaaggagaaggagtttgaggccatc
aaggagcgctacctggggatcatcaagaaaaagcggcgggtgcggcgcctcaacgaccgc
aagtttgtcttcgactgggatgcgtcggaggacacagctgtggactacaaccccatctac
aaggacaagcacacagttcagttctatggcagggggcacatcgggggcatcgacctcaag
gcccaaaagaaggagcaatccaagttctacggcgaactgctcgagcgcagaaggacgcag
gccgagaaggaccaggaagtgctgcggctgaagaaggtgaagcgcaaggaggagaagcag
aagtgggacgaccggcactggtcccacaagtccctggaggagatgcaggagcgagactgg
cgcatcttccgggaagacttcaacatcaccatcaagggaggccgcatccccaacccgctt
cgcaagtggaacgagtcccccttgccctcctccatcctggacatcatcaaggagctgggc
tacaaggacccgacgcccatccagcggcaggccatcccgatcgggctccaaaaccgggac
atcattggggtggccgagaccggcagtggcaagacgctggccttcctgctgcccctgctc
gtctggatcacctctctgcccaagatcgtgaggcaggaggacgcggaccagggcccatac
gccatcatcatggcgcccacccgcgagctggcccagcagatcgaggaggagaccatcaag
ttcgccaagatgctcgagatacgcaccgtggccgtcatcggagggctctcccgagaggag
cagggcttccgactgcgcctcggctgcgagattgtgattgccacccccggtcgtctgatc
gacgtgttggagaacaggtacctcgtgctgagtcgctgcacctacatagtcttggacgag
gccgaccggatgattgacatgggtttcgagggggaggtccagaaaatcctggactttatg
ccagtcaccaaccagaagccggacacggaggaagcggaggacgaggagaaactgctcgct
aacttcgcctccaagcacaagtaccgccagacggtgatgttcacagccaccatgcctcca
gccgtggagcgtctggcgcggtcgtatctccgccgtccggccatcgtctatatcggctcc
atcggcaagcccgtggagagaaccgaacaggtggtccacctggtcaccgagagcgagaag
aggaggaagctggtggagctgctcaaccgtggggtggagcctccggtcatcatcttcgtc
aaccagaagaagggggccgatgtcctggccaagggtctagagaagatgggcttcaacgcc
tgcaccttgcacggaggcaagggccaggagcagcgagagtacgccctggccagcctcaag
aacggcgccaaggacatcttggtggccaccgacgtggccggacgtggtatcgacatccgc
aacgtttccatggtcatcaactacgacatggccaagtccatcgaagactacacgcacagg
attgggcgtacgggccgagcggggctgacgggaaaggcagtgtctttcgtgaccaaggag
gactcccacctgttctacgacctgaagcagctgatcatgagcagccccgtgtccacctgc
cccccggagctggccaatcacccagacgcgcagcacaagccgggcaccgtggtcaccaag
aagcgcagggaggagaagatcttcgcctga
DBGET
integrated database retrieval system
