Ixodes scapularis (black-legged tick): 8031643
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Entry
8031643 CDS
T01131
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
isc
Ixodes scapularis (black-legged tick)
Pathway
isc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
isc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
8031643
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
isc03019
]
8031643
Enzymes [BR:
isc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
8031643
Messenger RNA biogenesis [BR:
isc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
8031643
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
TniB
MMR_HSR1
AAA_22
nSTAND3
AAA_16
CbiA
AAA_35
ATP_bind_1
Motif
Other DBs
NCBI-GeneID:
8031643
NCBI-ProteinID:
XP_040065385
UniProt:
A0A4D5REP2
LinkDB
All DBs
Position
Unknown
AA seq
425 aa
AA seq
DB search
MTEEKEAKEEVAQEFRIDPESELRFEVEGKEKVTVELKSGLAEIFGVELVKNKKFVFGSG
AKIAVFTWHGCTLELCGKTEVAYVAKETPMIFYANIHAVLEQMRQKCEEDDSKGPTVMVV
GPTDVGKSCLCRILLNYAVRQGRRPIFVDLDVGQGHISIPGTIGALLVERPAEVEEGFSQ
QAPLVYHYGHSSPGTNATLYNVLVSRLAEVINLRAESNKKASVSGIIINTCGWVKGAGYK
ALTHAALAFEVDVVLVLDQERLYNELARDMPSFVKVVFTPKSGGVVERTKSMRSEARDSR
VREYFYGLKTPLYPHSFDVKFADVKIYKIGAPSLPDSCMPLGMKAEDNFTKLVPVPIGPN
LLHHILSVSFAASSDEDILQTNVAGFICVTEVDVERQTLTVLSPQPRPLPKAVLLLSEVQ
FMDSH
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgactgaagaaaaagaagcaaaggaggaggtggcgcaggagtttcgaattgacccagag
tccgagctgcgttttgaagtggaaggcaaggaaaaagtcactgtggagttaaaatctggc
ctggctgagatcttcggagttgagcttgtgaagaacaagaagtttgtgttcggatcggga
gccaagattgccgtgtttacgtggcatggctgcacccttgaattgtgtgggaagaccgag
gttgcctatgttgccaaggagacgcccatgatcttctatgccaacatccacgcagttctg
gagcagatgcgacagaagtgcgaagaggacgactcaaagggacctacggtcatggtggtg
ggccccacagacgtgggcaagagttgtctttgtcggattctgctcaactatgcggtgcgc
cagggcaggagaccaatattcgtggacctcgacgtcgggcagggtcacatatctataccg
ggaaccattggagctctgttggtggagcgcccggcagaagtggaagagggcttctcacag
caggcacccctggtgtaccactacggccacagcagcccggggaccaatgccaccctctac
aatgtcctagtctcgcgccttgccgaagtcataaacctgcgcgccgagagcaacaaaaag
gccagcgtgagtggcatcatcatcaacacgtgcgggtgggtgaaaggagccggctataag
gcgctgactcacgcggcccttgcctttgaggtggatgtggttctggtgttggaccaggaa
aggctgtacaacgagctggcgagagacatgcccagcttcgtcaaagtggtcttcacgcca
aagtctggaggggtggtggagcggaccaagtcgatgcggtcagaagcgagggactcccgc
gtgagggagtacttctacggcctcaagacgcctctctacccacactctttcgacgtcaag
tttgctgacgtgaaaatctacaagattggagccccatcccttcccgattcctgtatgccg
cttggaatgaaggctgaggacaacttcacaaagctggtcccagtcccaataggtcctaat
ctgcttcaccacatcctgagcgtcagctttgctgctagcagcgatgaagacattcttcag
acaaacgttgccgggttcatctgtgtaactgaagtggacgtcgagaggcagacgctaacc
gtgctgtcaccacagccacgaccacttcccaaggcggtgctcttgctgagcgaagttcag
ttcatggactcccactga
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