Ixodes scapularis (black-legged tick): 8033544
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Entry
8033544 CDS
T01131
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
isc
Ixodes scapularis (black-legged tick)
Pathway
isc03013
Nucleocytoplasmic transport
isc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
isc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
8033544
03015 mRNA surveillance pathway
8033544
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
isc03019
]
8033544
Enzymes [BR:
isc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
8033544
5.6.2.5 RNA 5'-3' helicase
8033544
Messenger RNA biogenesis [BR:
isc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
8033544
mRNA cycle factors
Common to processing body (P body) and stress granule
8033544
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NAT10_TcmA_helicase
UvrD-helicase
NPHP3_N
DEAD
AAA_16
nSTAND3
SRP54
T2SSE
Motif
Other DBs
NCBI-GeneID:
8033544
NCBI-ProteinID:
XP_029828597
LinkDB
All DBs
Position
Unknown
AA seq
1142 aa
AA seq
DB search
MSMSVDAYGPSSQTLTFLDTEEATDLLGADTQGSEFDFTDFTLPSQTQASQVDGAQTQGG
SRGGQLPGPNSEVSLGNGLDAVAATGQVLGELTFEEDEEDQYYSKDLPDHACKYCGIHDP
GCVVQCNVCKRWFCNGRGNTSGSHMVNHLVRAKHKEVTLHRDGPLGETVLECYSCACRNV
FVLGFIPAKADSVVVLLCRHPCAAQSSLKDMNWDPDQWKPLIHDRCFLPWLVRAPHERDQ
LRARQVTAQQISRLEELWKDNVDASFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVK
MEADYDKKLKESQTQDNIEVRWDIGLNKKMIAYFTVAKSDTDMRLMHGDELRLRYLGELH
KPWSGVGHVIKIPDNYSEEVGIEMKTNLGVPSECTSNFVVDFVWKSTSFDRMQAALRKFA
VDECSVSAYIYHKLLGHEVEDVVMRCQLPKHFSAPNLPELNRSQVYAVKHALQRPLSLIQ
GPPGTGKTVTSGTIVYHLVKQSNGPVLVCAPSNIAVDQLTEKIHQTSLKVVRLCAKSREA
INSPVSFLALHNQIRNMEGHSELHKLQQLKDETGELSSADEKRYRMLKKACERELLEAAD
VICCTCVGAGDPRLARFKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVM
CKKAARAGLSQSLFERLVVLGIRPLRLEVQYRMHPQLSKFPSNFFYEGSLQNGVFADERR
MKGVDFPWPQPDKPMLFYACQGQEEMAGSGTSYLNRTEAALVEKIATRFLRSAVKPQQIG
IITPYEGQRAYLVQHMQFQGALHAKLYQEIEVASVDAFQGREKDLIVMSCVRSNEHQGIG
FLNDPRRLNVALTRARYGIIIVGNPKVLSKQPLWNHLLSFYKENRVLVEGPLNNLKESLI
QFSKPRKLINTVNPGGHFMSTTVFDAREAMIPGSVYDRSSQLNGVDPSGLTWRGPVTPRG
AGLGAAWAPVKENFPEGFTGRSHDPLAFIGPPDRATNPGLPVPVGLFMNMAHVPPRFYNQ
HQQALQARQRGGSKSAGRRGVPSRQPVGGRRPGQQLSQPGLNSQASQGPLTQPGPGGGVL
SQGGVALSQLSQESCFLGEELRSQAEGMLSQDSTYQGDRHCFGGPGAGGLAPMANPHFSQ
PY
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atgagcatgagtgtggacgcgtacggcccgagctcgcaaaccctgacgttcctcgacacc
gaggaagccacggacttgctgggcgccgacacgcagggttcggaattcgatttcaccgac
ttcacgctgccgtcacagacgcaggcgtctcaggtggacggcgcacagacgcagggaggc
tccagaggtggacagctgccaggccccaactccgaggtctctctgggcaacggactggac
gcagtggccgcaacgggccaagtcttgggcgagctcacctttgaagaggacgaggaagac
cagtactacagcaaggacctccccgaccacgcgtgcaagtactgcggcatccacgacccc
ggatgcgtggtgcagtgcaatgtgtgcaagcggtggttctgtaatggccgaggcaacact
tccggcagccacatggtgaaccacctggtgcgagccaagcacaaggaggtgaccttgcac
cgggacggccccctgggggagacagtgctggagtgttattcgtgcgcctgccggaacgtg
ttcgtgctgggcttcatcccggccaaggcggactcggtggtggtgctgctctgccggcac
ccgtgtgcagcccagtcctccctcaaggacatgaactgggaccccgaccagtggaagcca
ctcatccacgaccgctgcttcttgccctggctagtcagggccccccacgagcgggaccag
ctaagggcacgtcaggtcaccgcacagcagatctctcggctcgaggagctctggaaggac
aacgtagatgcaagcttccaggacctggagaaacccggagtggacgaggaacctcagcag
gtgttgctcaggtacgaggacggctaccagtaccagaacatctttgggcctctggtgaag
atggaggcagactacgacaagaagctcaaggagtcgcaaacccaggacaacattgaggtg
cgctgggacattggcctcaacaagaagatgatcgcctacttcacggtggccaaatcagac
actgatatgaggctgatgcatggggacgagctgagactgcgttaccttggagaactccac
aagccctggtctggggttggccacgtcatcaagatcccagacaactacagcgaagaggtg
ggcattgagatgaagaccaacctcggggttccatcagagtgcacatccaacttcgtggtc
gactttgtctggaagtcaacatccttcgacaggatgcaggcggccctgcgcaagtttgct
gtggacgagtgctcggtgtcggcctacatctaccacaagctgctgggccacgaggtggag
gatgtggtgatgcgctgccagctgcccaagcacttctcagcccccaatcttcccgagctg
aaccgctcccaggtgtacgccgtcaagcacgccctgcagaggcctctatccctcatacag
ggtcccccaggaacaggcaaaacggtgacctcgggcacgatagtgtaccacctggtgaag
cagagcaacggtccggtgctggtgtgtgccccgagcaacattgccgtggaccagctcacg
gagaagatccaccagaccagcctcaaggtggtgcgtctttgtgccaagagtcgggaggcc
atcaactcgcctgtttctttcctggccctgcataaccaaatccgcaacatggaaggccac
tccgaacttcacaagctgcagcagctcaaggacgagacgggggagctgtcgtcagcagat
gagaagcgctaccggatgctcaagaaggcctgcgagagagagctgctcgaggcggcggac
gtgatctgttgcacgtgcgtgggggcgggagacccccggctggcccgcttcaagttccac
tcgatcctgatcgacgagagcatgcaggccacggagccagagtgcatggtgcccgtcgtg
ctgggagccaagcagctgatcctggtcggggaccactgccagctgggccccgtggtgatg
tgcaagaaggcagcccgggcgggcctgtcgcagtccctcttcgagcgcctggtggtgctc
ggcatccggcccctgaggctggaggtgcaataccgcatgcacccgcagctgtccaagttc
ccctcaaacttcttctacgaggggtccctgcagaacggagtctttgccgacgagcggcgg
atgaagggggtggacttcccctggccgcagccggacaagccgatgctgttctacgcctgc
caagggcaagaagagatggcgggcagcggcacttcttaccttaacaggacggaggcggcc
ctggtggagaagattgccacccggttcctgcgcagcgcagtgaagccccagcagatcggc
atcatcaccccgtacgagggccagcgggcgtacctggtccagcacatgcagttccagggg
gccctgcacgccaagctgtaccaagagatcgaggtggccagtgtcgacgctttccagggc
cgggagaaggacctgattgtgatgtcgtgcgtgcgctccaacgagcaccagggcatcggc
ttcctgaacgacccccggcgtctgaatgtggccctgacccgtgcccgctacggaattatc
attgtgggcaaccccaaggtgctgtccaagcagcccttgtggaaccacctcctcagcttc
tacaaggagaaccgggtgctggtcgaggggcccctcaacaatctcaaggaaagcctcatc
cagttcagcaagccccgcaagctcatcaacactgtcaaccccggcggtcacttcatgagc
acgacagtgtttgacgcccgggaggcaatgatcccgggcagcgtgtacgaccggtcgtcg
cagctcaacggcgtggacccctccggcctgacctggcggggccccgtgaccccccggggc
gccggcctgggagccgcatgggcccccgtcaaggagaacttccccgagggcttcacgggg
cgcagccacgaccccctggccttcatcgggccccccgatcgggccaccaacccggggctc
cccgtgcccgtgggtctcttcatgaacatggcccacgtgccgccacgcttctacaaccag
caccagcaggcactccaggcccgacagcggggcggcagcaagagtgcgggtcgccgtgga
gtgccaagccgtcagcccgtgggtggccgcaggcccggccagcagctctcccaaccgggc
ctcaacagtcaggccagtcagggtcccctgacacagccggggcccggagggggcgtgctg
tcccaggggggagtggcgctgtcgcagctgtcgcaggaaagctgcttcctcggcgaggag
ctgcggtcccaggcggagggcatgctgtcgcaggactcgacctaccagggagaccggcac
tgcttcgggggccccggggcagggggcctggcccccatggccaacccccacttctcgcag
ccgtactga
DBGET
integrated database retrieval system
