| Entry |
|
|---|
| Name |
(RefSeq) regulator of nonsense transcripts 1
|
|---|
| KO |
|
|---|
| Organism |
isc Ixodes scapularis (black-legged tick)
|
|---|
| Pathway |
|
|---|
| Brite |
KEGG Orthology (KO) [BR:isc00001]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
8033544
03015 mRNA surveillance pathway
8033544
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:isc03019]
8033544
Enzymes [BR:isc01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
8033544
5.6.2.5 RNA 5'-3' helicase
8033544
Messenger RNA biogenesis [BR:isc03019]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
8033544
mRNA cycle factors
Common to processing body (P body) and stress granule
8033544
|
|---|
| SSDB |
|
|---|
| Motif |
|
|---|
| Other DBs |
|
|---|
| LinkDB |
|
|---|
| Position |
Unknown
|
|---|
| AA seq |
1142 aa
MSMSVDAYGPSSQTLTFLDTEEATDLLGADTQGSEFDFTDFTLPSQTQASQVDGAQTQGG
SRGGQLPGPNSEVSLGNGLDAVAATGQVLGELTFEEDEEDQYYSKDLPDHACKYCGIHDP
GCVVQCNVCKRWFCNGRGNTSGSHMVNHLVRAKHKEVTLHRDGPLGETVLECYSCACRNV
FVLGFIPAKADSVVVLLCRHPCAAQSSLKDMNWDPDQWKPLIHDRCFLPWLVRAPHERDQ
LRARQVTAQQISRLEELWKDNVDASFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVK
MEADYDKKLKESQTQDNIEVRWDIGLNKKMIAYFTVAKSDTDMRLMHGDELRLRYLGELH
KPWSGVGHVIKIPDNYSEEVGIEMKTNLGVPSECTSNFVVDFVWKSTSFDRMQAALRKFA
VDECSVSAYIYHKLLGHEVEDVVMRCQLPKHFSAPNLPELNRSQVYAVKHALQRPLSLIQ
GPPGTGKTVTSGTIVYHLVKQSNGPVLVCAPSNIAVDQLTEKIHQTSLKVVRLCAKSREA
INSPVSFLALHNQIRNMEGHSELHKLQQLKDETGELSSADEKRYRMLKKACERELLEAAD
VICCTCVGAGDPRLARFKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVM
CKKAARAGLSQSLFERLVVLGIRPLRLEVQYRMHPQLSKFPSNFFYEGSLQNGVFADERR
MKGVDFPWPQPDKPMLFYACQGQEEMAGSGTSYLNRTEAALVEKIATRFLRSAVKPQQIG
IITPYEGQRAYLVQHMQFQGALHAKLYQEIEVASVDAFQGREKDLIVMSCVRSNEHQGIG
FLNDPRRLNVALTRARYGIIIVGNPKVLSKQPLWNHLLSFYKENRVLVEGPLNNLKESLI
QFSKPRKLINTVNPGGHFMSTTVFDAREAMIPGSVYDRSSQLNGVDPSGLTWRGPVTPRG
AGLGAAWAPVKENFPEGFTGRSHDPLAFIGPPDRATNPGLPVPVGLFMNMAHVPPRFYNQ
HQQALQARQRGGSKSAGRRGVPSRQPVGGRRPGQQLSQPGLNSQASQGPLTQPGPGGGVL
SQGGVALSQLSQESCFLGEELRSQAEGMLSQDSTYQGDRHCFGGPGAGGLAPMANPHFSQ
PY |
|---|
| NT seq |
3429 nt +upstreamnt +downstreamnt
atgagcatgagtgtggacgcgtacggcccgagctcgcaaaccctgacgttcctcgacacc
gaggaagccacggacttgctgggcgccgacacgcagggttcggaattcgatttcaccgac
ttcacgctgccgtcacagacgcaggcgtctcaggtggacggcgcacagacgcagggaggc
tccagaggtggacagctgccaggccccaactccgaggtctctctgggcaacggactggac
gcagtggccgcaacgggccaagtcttgggcgagctcacctttgaagaggacgaggaagac
cagtactacagcaaggacctccccgaccacgcgtgcaagtactgcggcatccacgacccc
ggatgcgtggtgcagtgcaatgtgtgcaagcggtggttctgtaatggccgaggcaacact
tccggcagccacatggtgaaccacctggtgcgagccaagcacaaggaggtgaccttgcac
cgggacggccccctgggggagacagtgctggagtgttattcgtgcgcctgccggaacgtg
ttcgtgctgggcttcatcccggccaaggcggactcggtggtggtgctgctctgccggcac
ccgtgtgcagcccagtcctccctcaaggacatgaactgggaccccgaccagtggaagcca
ctcatccacgaccgctgcttcttgccctggctagtcagggccccccacgagcgggaccag
ctaagggcacgtcaggtcaccgcacagcagatctctcggctcgaggagctctggaaggac
aacgtagatgcaagcttccaggacctggagaaacccggagtggacgaggaacctcagcag
gtgttgctcaggtacgaggacggctaccagtaccagaacatctttgggcctctggtgaag
atggaggcagactacgacaagaagctcaaggagtcgcaaacccaggacaacattgaggtg
cgctgggacattggcctcaacaagaagatgatcgcctacttcacggtggccaaatcagac
actgatatgaggctgatgcatggggacgagctgagactgcgttaccttggagaactccac
aagccctggtctggggttggccacgtcatcaagatcccagacaactacagcgaagaggtg
ggcattgagatgaagaccaacctcggggttccatcagagtgcacatccaacttcgtggtc
gactttgtctggaagtcaacatccttcgacaggatgcaggcggccctgcgcaagtttgct
gtggacgagtgctcggtgtcggcctacatctaccacaagctgctgggccacgaggtggag
gatgtggtgatgcgctgccagctgcccaagcacttctcagcccccaatcttcccgagctg
aaccgctcccaggtgtacgccgtcaagcacgccctgcagaggcctctatccctcatacag
ggtcccccaggaacaggcaaaacggtgacctcgggcacgatagtgtaccacctggtgaag
cagagcaacggtccggtgctggtgtgtgccccgagcaacattgccgtggaccagctcacg
gagaagatccaccagaccagcctcaaggtggtgcgtctttgtgccaagagtcgggaggcc
atcaactcgcctgtttctttcctggccctgcataaccaaatccgcaacatggaaggccac
tccgaacttcacaagctgcagcagctcaaggacgagacgggggagctgtcgtcagcagat
gagaagcgctaccggatgctcaagaaggcctgcgagagagagctgctcgaggcggcggac
gtgatctgttgcacgtgcgtgggggcgggagacccccggctggcccgcttcaagttccac
tcgatcctgatcgacgagagcatgcaggccacggagccagagtgcatggtgcccgtcgtg
ctgggagccaagcagctgatcctggtcggggaccactgccagctgggccccgtggtgatg
tgcaagaaggcagcccgggcgggcctgtcgcagtccctcttcgagcgcctggtggtgctc
ggcatccggcccctgaggctggaggtgcaataccgcatgcacccgcagctgtccaagttc
ccctcaaacttcttctacgaggggtccctgcagaacggagtctttgccgacgagcggcgg
atgaagggggtggacttcccctggccgcagccggacaagccgatgctgttctacgcctgc
caagggcaagaagagatggcgggcagcggcacttcttaccttaacaggacggaggcggcc
ctggtggagaagattgccacccggttcctgcgcagcgcagtgaagccccagcagatcggc
atcatcaccccgtacgagggccagcgggcgtacctggtccagcacatgcagttccagggg
gccctgcacgccaagctgtaccaagagatcgaggtggccagtgtcgacgctttccagggc
cgggagaaggacctgattgtgatgtcgtgcgtgcgctccaacgagcaccagggcatcggc
ttcctgaacgacccccggcgtctgaatgtggccctgacccgtgcccgctacggaattatc
attgtgggcaaccccaaggtgctgtccaagcagcccttgtggaaccacctcctcagcttc
tacaaggagaaccgggtgctggtcgaggggcccctcaacaatctcaaggaaagcctcatc
cagttcagcaagccccgcaagctcatcaacactgtcaaccccggcggtcacttcatgagc
acgacagtgtttgacgcccgggaggcaatgatcccgggcagcgtgtacgaccggtcgtcg
cagctcaacggcgtggacccctccggcctgacctggcggggccccgtgaccccccggggc
gccggcctgggagccgcatgggcccccgtcaaggagaacttccccgagggcttcacgggg
cgcagccacgaccccctggccttcatcgggccccccgatcgggccaccaacccggggctc
cccgtgcccgtgggtctcttcatgaacatggcccacgtgccgccacgcttctacaaccag
caccagcaggcactccaggcccgacagcggggcggcagcaagagtgcgggtcgccgtgga
gtgccaagccgtcagcccgtgggtggccgcaggcccggccagcagctctcccaaccgggc
ctcaacagtcaggccagtcagggtcccctgacacagccggggcccggagggggcgtgctg
tcccaggggggagtggcgctgtcgcagctgtcgcaggaaagctgcttcctcggcgaggag
ctgcggtcccaggcggagggcatgctgtcgcaggactcgacctaccagggagaccggcac
tgcttcgggggccccggggcagggggcctggcccccatggccaacccccacttctcgcag
ccgtactga |
|---|
