Ixodes scapularis (black-legged tick): 8041254 Help Entry 8041254           CDS       T01131                                  Name (RefSeq) protocadherin Fat 4   KO K16669   protocadherin Fat 4 Organism isc  Ixodes scapularis (black-legged tick) Brite KEGG Orthology (KO) [BR:isc00001]  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04515 Cell adhesion molecules [BR:isc04515]     8041254 Cell adhesion molecules [BR:isc04515]  Cadherins   Cadherin related    8041254 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Cadherin Cadherin_CELSR2_9th Fibulin_C Cadherin_2 Cadherin_pro RET_CLD1 PCDH15_12th DUF3481 PAG Motif Other DBs NCBI-GeneID:  8041254 NCBI-ProteinID:  XP_040358648 LinkDB All DBs Position Unknown AA seq 3338 aa AA seqDB search MDNSLSDINYFRHEDIDDRTVSIKVSKSLEDLVDRPDPQSVLKFKLTCRGASGTEEAFLP VTVYIQDVNDHAPEFQNVPYHLEVDELTPVGLTVFRGVHAIDRDKPNTPNSDVTYAIVGG NENNSFALSDPLEGIIVINKPLDFDHGPREYRLEIQARDHGSPESFQSLTSVTIRVKDAD DQNPVFTRQVYKTNVTEAAVITGARLRVKLQTDAPVHAFDQDLGINAPLRYSIIHGNELG IFELQEQTAELFMVREVDLESLPSPVFTLQVQATQMDNSLRYALAKVEVSVMDINDNVPV FDYDMYNITVMENLPPGFTVVQVHAVDRDSGDNADFLYHLIDDTGGFTIDEKEGWIRVRD PAKLDREKVDKLTMRVLALERKPNVNPDAKASTAVVEVSLLDANDNNPQFLPEGVYIFSV TETDPPGTVIGSVVAVDPDMGENGRVVFFKQNDTLSYSVPFGVHPFNGSVYVLDRFKDIP VKPDRYTFFVVASDAARSEHERRTAVAVVHVNVTDVNNNVPEFVGAPYEAQVGESLPAGA LVTQVSAKDLDANTALTYSIIAGNDDETFHMNPFTGVITSGTVLDFEKKQSYDLLVQVSD GFNTAVSPLTVHVVDINDQQPVFTHNYYNFSVVEEMTENVTVGTIRAIDRDSGRNAAIRY TILGDHANNALLVDEGGNIVTKRSLDRERESKLEFLVIAFDGGIPQLSGTTTVAVQVEDI NDNPPYFEGDTFFVNVPEEKDPPLEVFTLQAKDVDSGDNAVMKYRIIGGNDDAVFGINED TGVVTTSKRLNYETQAEYALQVAAFNVRPFQGPQAATMGNPVVNLIVRVQDVNDELVTFE QTSYNFRIWENTTRSESVGFLNATNQHQTSGSQHVTFWIGEGNDLGKFWINPSTGELVLM DKVDRDPPDSQVQFRLKVFARDLQSITPYNTSVPVIIDVLDINDNAPSFGEEKFALELPE SLPLGTELPAFYRARDIDAGPNGQIVRFMTEGAEDKFFVNNVTGALTLISELDYETADTH EFVVLAMDGGTPPKTGSASIIISVQNINEFSPEFVGYPYNFYVAENAARGTSVGQIQATD KDGNKIVYAISDGDAEYFGIESDTGKLYVKKNLESRTSYTIVVTATDNGVPENRTLGVQV TVFVKEVNNYPPVFSHSSYKGTVLEKYATDRVIIKLFATDKDLQNNTITYNITSGNDEGI FVIDHETGDIRVNPETINLLDYDRKKQFVMLVQAKDSHNTPLFGLSMVTIDVLDSNDHAP TFSKTAYSASLPENLPSGHCFLSIQASSGDSVDQVTYEILNKDIPFTVNGRTGDVCTSQV LDRERRDSYEFAVAASDGKFDMKAPVSIEVVDENDNPPRFEKERYSVSIPHDSQAGRSVI QLHAIDLDVANNGEITYWIKNTHGIFEIDAKTGLVRMAAGLPLNSMKNLTYEMEVFAQDH GAASNIGKTSLVVKVSSTHNNPPVFDRFAYSVYVDENAANVPLVQVHASDPDEGSAGKVV YRIARATKRETFRIDSQTGKITLVSPLDYEQIKHLEVFVEARDDANEPQFATTIVQVTVN DVNDNAPEFLSMPRLLRIPESTSQNELVYRVQAIDLDSPAGGNNDIKFELNPPSTRFSIH PKTGQVFATQPLQLGTESLRIVATDGSIYPLTSAVEMRIEVYKDSVDEPSPAFSSVQYTV DSASVIEAGATVLEARATVPNGSPIWYNITGDDGSHVRRFSINHDSGRIVTTTRLDAEKQ SVYHFMVVAVNKRDPQHQAEAGVVIRLTDKNVRCPKFPFTEYFASIQENSPPDTVVLPNL IAEDVEKFEKISYQITEDNSDDNFVLDTKQNVISLRVKKPLDRDNMPAILQGVYTLTVTA SNYKCSGSSRIKVYVEDVNDNSPVFEKNDYVVELEENTPPGQTVTHLVAADRDGLDLGKI RYYIIDGNSGEEFSMDETSGIISVRLIPDREKTPAFMLKVLAVDSANNTGRASVHIIIKD TNDWTPTFLNDTFFLNVTEGPPSIGAFVQLPVADYDDGINRQVELYIVDGNNENQFRLGV NENGAVLKVVSELDRDKYKVPDAALHLVVVAARDMGTPSRTGSTTVAIVIQDVNDSPPQF EKEAYYEFVSENAPVGTIVDTVKATDPDSPQNTNMTYSFARLSRRVPFMIDPILGTVNIT RALDISESQEYSLEVQANDGLWKTTTAMKIYVSEAEERDPRFDQLHYKFKVLENVPGAVV GQVELQSRTLRVNSQMRYSIINTDVRPYFNITKDGEIFTKVGLDREKRSRYTFTVMLEEK RPTTKVSVSEVSVEVVDVNDETPTFMQSYQGTIRENSPPGTLVTVTPSIMAIDKDSGNNS VVHYSLGGSGSDLFSILDSGVVIFSGGNPVSVLDRELADRYELLVTARDLGNLSSTTYLT IKVEDENDNAPSFQHGPLRVLLPETARPGARVAQVSAIDADEKGPNSKVEYSIVSGSRGN VRIDRQTGEIFVVGALKPETVYLLNVSAADGRGLANLIVVNITVLDVNDHKPTFVKPEYS FTILEGNYKEQRSRLGVLRAVDDDRGKNGAVDYAIISRKDQNLPFHVDVHTGELFATGVL DRETKFNYYFHVLALDNGDPPQNSTVNVTVTIEDANDEKPRFFTDPYLAQIPENLDPGQK VTQIRAFDPDTGENGLVFYKLGGGHDNKFYIDSKDGTVWTLSKLDFEKQEFYNMTVIAYD QGKPSMSAMAKLWVTVTDRNDVVPEFPKSVYTLEVAENTRVGDVVYTLDAGPGNFLYTLD NPQEVDTFSVEPHNGEIRLAKALDSIHQSHYRLVVSATDDGDPPKSDHAEVNIIIGSGQG VRLFPLRMYDVLVFENQLAPQVVLDLNATDEIAHRPVQYTIVGNNYNGLFAIEPDTGRLS VTSSLDREAMSKYVVKVRAMNKKRVGRAVRDNAAKRNKKPEEDTAHVAFDEALVVVNVGD ENDNSPVFDHQGKPIVAAVPLEASFGYQVTKLHARDADTGFNGAIRYEIIQKAEDASSKF QIDPVTGVVRSVVTFSLDGGKMYGFDVKAVDREGSEGGNAAVANVFVYVLPETKLVLFVT DTPPVHVEQHIDRILGYLGNITGFQVKMAKLEPHHEDEMEHPESSDLFLYAINKDTNEIV DTDTLLNVLNENSQVIVRYLETFRIRRIQGVSVQEKISQMGTTEIAIIALSSVIFLGAVL GIVLLCSSCQRKKLRKRQKTWEQQRLYSIKNPLMGKAVGNPYGGRVSAGPPPIGVPPPNL QYNNVDDVPMDYNDSMTDTYSVNKHNKMKLRQTAPDGASSLNPPRSPRFERYAKNENGWY DNRDVETVKSDMTGSNFTSWSSRRSHQSQSRGKPVTEL NT seq 10017 nt NT seq  +upstreamnt  +downstreamnt atggataacagtttgagcgatatcaactactttcggcatgaggacatcgacgatcggacg gtgtccatcaaggtttccaaatcgcttgaagacctcgtcgatcggcctgacccacagagc gtgctgaaattcaagctgacgtgtcgtggagcttctggaacggaggaagccttcctgcca gtcacggtctacattcaagacgtcaacgaccacgctcctgaatttcagaatgtaccttac caccttgaagtcgacgaactgacgcccgtcgggctgaccgtgttccgaggtgtgcacgcc atcgacagggacaagcccaacacgcccaactccgacgtcacctacgccattgtgggcggc aacgagaacaattctttcgccctctccgaccccctggagggaatcatcgtcatcaacaag cccctggatttcgaccatggcccaagagaataccgcctcgaaattcaagcgcgggatcac ggttctcccgaaagcttccagtcactgaccagcgtgaccatccgagtgaaggacgcagac gatcaaaatccggtctttacgcgacaagtctacaagaccaacgtaactgaggctgctgtg atcacgggcgccaggctacgagtgaagcttcagacggacgcccccgtgcacgccttcgac caagacctgggcatcaacgcacccctccgctactcaatcatccacggaaacgaactgggg attttcgagctccaggagcaaacagccgaacttttcatggtccgtgaagtggatctggaa tccctaccgtcaccggtgttcaccctccaagtccaagcgacgcagatggacaactccctt cgctacgccctagccaaggtggaagtttccgtgatggacatcaacgacaacgtgcccgtg ttcgactacgacatgtacaacatcaccgtcatggagaacctgccgcccggattcacggtg gtccaagtgcacgccgtggaccgagattccggcgacaacgcggacttcttgtaccacctc atcgacgacaccgggggcttcaccatcgacgagaaggaaggctggattcgagtcagggat cccgccaagctggacagagagaaggttgacaagctcacgatgagggtcttggcacttgag cggaagccgaacgtgaacccggatgccaaggccagcacagccgtggtggaagtgtctctt ctggatgccaacgacaacaacccccagttcttgcccgagggtgtctacatcttcagcgtc acagagaccgatcctcctggaaccgtcatcggatcggtggtggccgtggatccagacatg ggcgagaacggccgtgtggtattcttcaagcagaacgacactctcagctacagcgttcca ttcggagtacacccgttcaacggatcagtgtacgtgctcgatcgcttcaaagacattcct gtcaagccggaccgctacactttctttgtcgtcgcatccgatgccgccagaagtgagcac gagcgaagaaccgccgtggccgtggtgcacgtcaacgtgactgacgtcaacaacaacgtt ccggagttcgtgggggccccctacgaagcccaggtcggggagtcattgccggcgggagcg cttgtcactcaagtctctgcgaaagacctggacgccaacacagcgctcacctactcaatc atcgctggaaatgacgacgaaacctttcacatgaacccgtttacgggagttatcaccagt gggaccgtattggattttgagaagaagcagtcctacgatctcctcgttcaagtctctgat ggcttcaatacggccgtctctccgctcacagtgcacgtcgtggacatcaacgatcagcag cccgtgttcacgcacaactattacaatttctcggtcgtcgaggaaatgaccgagaacgtg actgtcggaaccatcagggccatcgatagagactcaggtcggaacgcagccattcggtat accatcttgggcgaccacgccaacaacgcgctcctggtggacgagggaggcaacatcgtg accaagaggagtctcgaccgcgagcgcgagtcaaaactggagtttctcgtaatcgccttc gacggtggcatcccgcagcttagtggaaccaccacggtcgcggtccaggtggaagacatc aacgacaatccgccctacttcgaaggggacacgttcttcgtcaacgtgccggaggagaag gacccgccgctggaggtcttcacgcttcaggcaaaggacgtggactccggagacaacgcc gtgatgaagtaccgcatcatcggtggcaacgacgacgccgtcttcggcataaacgaggac accggcgtggtgaccacgagcaagcgactcaactacgagactcaagccgagtacgccctc caagtggccgcgttcaacgtccggccgttccaaggaccgcaggccgccacaatgggcaac cctgtggtcaacctcatcgtcagagttcaggacgtgaacgacgagctggtgaccttcgag cagacctcgtacaacttccggatctgggagaacaccacgcgcagcgagagcgtgggcttc ctcaacgccaccaaccagcaccagacgtccgggagccagcacgtgaccttctggatcggc gaaggcaacgacctgggcaagttctggatcaacccgagcaccggcgagctcgtgctcatg gacaaggtggacagggacccgcccgacagccaggtccagttccgactcaaggtcttcgcc agggacctccagtccatcacgccctacaacacctcggtgcccgtcattatcgacgtgctc gacatcaatgacaatgcaccgtcctttggcgaagagaaatttgccctcgaacttccggaa agtctcccgctgggaaccgaactgcctgccttctaccgagcacgggacatcgacgctgga cccaatggacagatcgttcgttttatgaccgaaggagccgaggacaaattcttcgtgaac aacgtgacgggagccctcacgctgatctccgagctcgactacgaaactgccgacacgcac gagtttgtcgttctcgcaatggatggcggcacgcctcccaagactggatcggcaagcatc atcatttcggtgcagaacatcaatgagttcagtccagagtttgtcggctatccttacaac ttctacgtggccgagaacgcggctcgcggcaccagcgtcggacaaattcaggcgacggac aaagacggaaacaagatagtctacgccatatcggacggtgacgctgagtacttcggcatc gagagtgacaccggcaagctgtacgtgaagaagaatctcgagtcccgtacgtcgtacacg atcgtggtgacggccaccgacaacggcgtgcccgagaaccgcaccctcggcgtccaggtc accgtgttcgtgaaggaggtgaacaactaccctccggtcttctcgcactcgagctacaag ggaacggtcctcgagaagtatgccacggaccgggtcatcatcaagcttttcgctaccgac aaagatctacagaacaacaccatcacttacaatatcacgagcgggaatgatgaggggatc tttgtgatcgaccacgaaaccggagatatccgggtgaatcccgaaaccatcaatcttctc gactacgatcgcaagaagcagttcgtcatgttggttcaagcaaaagactcccacaacacg ccgctgttcggactgtctatggttaccattgatgtcttggattccaacgaccatgcacca acgttttcaaagacagcttattcggcgtcgcttcctgaaaacctcccatcgggacactgc ttcctaagtattcaagccagcagcggcgactcagtcgaccaagttacgtacgagatcctc aacaaggacatcccgtttaccgtcaacggcaggacaggggacgtctgcacatcccaagtg ctggaccgtgaacgtcgcgacagctacgaattcgcagtggccgcgtctgatggcaagttc gacatgaaggcccccgtcagcatcgaagtcgtcgacgagaacgacaaccctcctagattc gagaaggagcgctattccgtgagcataccgcacgactcgcaagcggggcgctctgttatt caacttcacgccatcgatctggacgttgccaacaacggggaaattacctactggatcaag aacacgcacggaatcttcgagatcgacgccaagacgggactggtccggatggccgcgggt cttcctctcaactcgatgaagaacctcacttacgagatggaggtatttgcccaggaccac ggtgccgcgtctaacatcggcaagacctcgcttgtcgtcaaggtgtccagtacgcacaac aaccctccggtcttcgatcggttcgcgtacagcgtgtacgtcgatgagaacgcggccaac gtgcccctggttcaagtgcacgcttctgatcctgacgaaggaagtgcgggcaaagtggtg tacaggatcgctagagcgacaaagagagaaacattccgaatagactctcagacgggaaaa attacattagtgtcgccattagattacgagcaaattaagcacttagaagtattcgtcgaa gcgagagatgacgccaacgagccgcagttcgcgacgacgattgttcaggtaactgtcaac gacgttaacgataatgcacccgagttcttgtctatgccacggttactacggataccagaa tcaacgtctcaaaatgaactggtttaccgagtgcaagcgatagatctggactcacccgct ggtggaaacaacgacatcaagttcgaactgaaccctccgagcacgaggttctcaatccac ccaaaaactggccaagtgtttgccacgcagccgttgcagcttggaacagagtctcttcgt attgtggcaacagatggatctatttacccgctcaccagtgctgtcgagatgcgcattgaa gtctacaaggactcagtggatgagcccagtcccgccttctcatcggttcaatacacggtg gattccgcttccgtcatcgaggctggcgccactgtcctcgaagcaagagccactgttccc aatggaagccccatctggtacaacatcaccggtgacgacggcagtcatgtccgtcgtttt tccatcaatcatgactcgggaagaatagtgaccactacccgcctggatgctgagaaacag tctgtctatcatttcatggttgttgccgttaacaagagggatccccaacaccaggctgaa gctggggttgtcatacgtctgacagacaagaatgtccgatgcccgaagttcccattcaca gagtatttcgcttcaattcaagagaactcgccacctgacaccgtagtgctccctaatctg attgctgaagatgttgagaagtttgaaaagatatcataccagatcacggaggacaattcc gatgacaacttcgtactggatacaaagcagaacgtcatatcgctgagggtaaaaaagcca cttgatcgagacaacatgccagctattcttcagggtgtctacaccttgacggtaacggca agcaactacaagtgctctggtagcagtcgcatcaaggtttatgtggaagacgtaaatgac aacagtcctgtatttgaaaagaacgactatgttgttgagctggaagagaacactccaccg ggtcagactgttactcacctggtggctgccgatcgagatggtcttgaccttggaaagatt cgttactacatcatcgatggaaatagcggagaagagttcagtatggacgagacaagtggc atcatctctgtcaggcttattcctgatcgtgagaagacgcccgcatttatgctgaaggtt cttgctgttgattctgctaacaatacggggagggccagtgtgcacattattattaaagac acgaatgactggacaccgacattcctcaatgacaccttcttcttgaatgtcactgaaggt cctccaagtattggtgcttttgttcagcttccagtcgcagattacgatgacggaattaac agacaggtggagctgtacatcgttgacggaaacaatgaaaaccagttcaggctgggtgtc aacgagaatggggcggtcctcaaggtagtatcagagctggatcgggacaagtacaaggtc cccgacgctgcgcttcacttggtcgtggtggctgcgagggacatgggtacaccttcaaga acgggctctacaacggttgccattgttatacaagatgtgaacgacagcccgcctcagttc gagaaagaggcgtactacgagttcgtctccgagaacgcgcctgttggtactatcgtggac actgtaaaggcaacggacccggactcccctcaaaatacgaacatgacttactccttcgct cgcttgtccagaagagttccgttcatgatcgaccctattttgggaactgtgaacatcaca agagctttggatatttcggaaagccaagaatactcgctcgaggttcaagcaaacgatggc ctttggaaaaccaccacggcgatgaagatttacgtgagtgaagcggaggaacgggatccg cggtttgaccagttgcactacaagttcaaggtgttggagaatgttcccggtgctgttgtg ggtcaggtggagctgcaatcgcgaacactccgtgtcaacagtcagatgcgttacagcatc ataaatacggacgttcgtccatactttaacatcaccaaggacggagagatcttcactaaa gttgggctcgacagagaaaaacgaagccgatatacgtttaccgtgatgttggaagaaaaa cgccccaccaccaaagtgagcgtgagtgaagtatcggtggaagttgttgacgtcaacgac gaaactcctacgttcatgcaatcctaccaaggaacaattagggagaactcgcctccagga accctagtcactgtgacaccgtcaatcatggccatagacaaggacagcggcaacaactct gtcgttcattactccttgggaggctctggcagtgatctattttctattctcgattctggg gtggtcatcttcagtggtggaaacccagtctctgtcctcgatcgtgagctggccgaccgc tacgagcttctggtaactgcacgtgatttgggcaatttgagttcaacgacctacttgaca atcaaggtagaagacgagaacgacaatgctccctcattccaacatgggcccctgagagtg ctactgccagagaccgctagacccggagctcgcgtggcgcaagtctcggcaatcgatgct gatgagaagggacccaactccaaggtggaatactctatcgtttctggaagcaggggcaac gtccgaatcgacaggcagactggcgagatctttgtggtcggagctttgaagccggagacg gtctacctgttgaacgtttcggccgctgacggccgtggtcttgccaacctcatagtcgtg aacatcacggtgctggacgtaaacgaccacaagccaaccttcgtgaagccagagtacagc ttcaccatcttggaaggaaactacaaagagcagaggtcaaggttgggtgttttgcgagct gtggacgacgatcgcggcaagaatggcgctgtggattacgctattatttctaggaaagac cagaatctgcccttccacgtagatgttcacaccggagaattatttgcgactggtgtactt gacagagaaaccaagttcaactactacttccatgttctcgctctggacaatggcgaccca ccacagaactcaaccgttaacgtaactgtgaccattgaggacgccaatgatgaaaaacct aggttcttcacggatccatatttggctcagattccagaaaacttagaccctggccagaag gttacgcaaattcgagcgttcgatcctgacaccggtgaaaatggacttgtcttttacaag ctgggaggtggacatgacaacaagttttatatcgacagcaaagatggcaccgtgtggaca ctgagcaagctggactttgagaagcaggagttctacaacatgacggtgattgcgtacgac cagggcaagcccagtatgagcgccatggccaagctctgggtgacggtgacggacaggaac gatgtggtgcccgagtttcccaagtcggtctacacgctggaggtcgcggaaaatacgcga gtgggcgacgtagtctacactctggatgcgggaccaggaaacttcctctacacgctcgac aacccccaagaagtggatacgttctcggtagaaccgcacaatggcgagattcggttggcc aaggctctcgacagcattcatcagagccactatcgtctcgttgtttctgcgacggatgac ggggatcctccaaaatcggatcacgctgaggtgaatatcatcatcggtagcggccaaggc gtccgcctgttccctctgcggatgtacgatgtgcttgtgttcgagaatcagcttgcccca caagtggttcttgatctgaatgcgacggacgagattgctcataggcctgttcaatacacc atcgtcggaaacaattacaatggcttatttgcaatcgagcccgataccgggagactgtcg gtcacatcaagcctcgacagggaggcgatgtcgaaatacgtcgtgaaggttcgagcgatg aacaagaaacgggttggtcgagcggtgcgcgataatgcggcaaagagaaacaagaagccc gaagaggacacggcgcatgtcgctttcgacgaagccctcgttgttgtgaatgtgggcgac gaaaacgacaactcgcccgtctttgaccaccagggcaaacccatagtggctgccgtgcct ctggaagcttccttcggctatcaagttaccaaattacatgcgcgcgacgctgacactgga ttcaacggcgccattcgttacgagatcatccaaaaggccgaagacgcctcttctaagttc cagatcgacccggtcactggggtggtgcgttctgtggtcaccttctccttggacggcggc aagatgtacggcttcgacgtcaaggccgtcgatcgtgaggggtcggaaggaggaaatgcc gccgttgccaatgtctttgtttacgtcctacctgaaaccaaactagtcttgtttgttact gacactccaccagtgcatgtggaacaacatattgacaggattcttggataccttggaaat attactggattccaagttaaaatggcaaagctggagccacatcatgaagacgagatggag catcctgagtcgtcggacctgttcctttatgctatcaacaaagataccaacgagattgtc gacactgatactttgctcaatgttctgaacgagaactctcaggtgattgtgcgctacctt gagaccttccgcattcggcgcatccaaggcgtctcagtgcaagagaaaatcagtcagatg ggaacgaccgagattgccatcattgcgcttagcagtgttatctttcttggtgctgttttg gggattgtcctgctttgctcatcgtgccaacgaaagaaactgcgcaaacgtcagaagaca tgggagcagcagcgactttacagtatcaaaaaccctctcatgggcaaggctgtggggaac ccatacggtggcagagtctcggcaggcccaccccccattggggtgccccctcccaatctg cagtacaacaatgtggacgacgtacccatggattacaatgacagcatgactgacacctac tctgtaaataagcacaacaagatgaaactacgacaaactgctcctgacggcgcctcgtcc ctaaacccgccacgcagtcctcgttttgagcgctacgcgaagaatgaaaatggctggtac gacaatagggatgttgagactgtaaaatctgacatgactggttcgaacttcacgagctgg tcttcgagaaggtcccatcagtcacagtcacgaggcaaacccgtgacggagttatga

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