KEGG   Ixodes scapularis (black-legged tick): 8041598
Entry
8041598           CDS       T01131                                 
Name
(RefSeq) LOW QUALITY PROTEIN: THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
isc  Ixodes scapularis (black-legged tick)
Pathway
isc03013  Nucleocytoplasmic transport
isc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:isc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    8041598
  09122 Translation
   03013 Nucleocytoplasmic transport
    8041598
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:isc03019]
    8041598
   03041 Spliceosome [BR:isc03041]
    8041598
Messenger RNA biogenesis [BR:isc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     8041598
Spliceosome [BR:isc03041]
 Complex C
  Other components
   EJC/TREX
    8041598
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    8041598
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40_CDC20-Fz Beta-prop_WDR3_1st WD40 WD40_Prp19 Beta-prop_EML_2 WD40_WDHD1_1st ANAPC4_WD40 WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd Beta-prop_RIG_2nd Beta-prop_WDR19_1st Beta-prop_WDR36-Utp21_2nd EIF3I WD40_Gbeta Beta-prop_WDR90_POC16_2nd Beta-prop_Aladin Beta-prop_TEP1_2nd Beta-prop_IFT122_1st WD40_MABP1-WDR62_2nd Beta-prop_IFT140_1st Beta-prop_EML eIF2A Beta-prop_Vps41 WD40_RFWD3 Beta-prop_HPS5 Beta-prop_TEP1_C RMC1_N Beta-prop_WDR36-Utp21_1st WDR90_beta-prop_4th Beta-prop_WDR75_1st Tricorn_2nd WD40_MABP1-WDR62_1st Beta-prop_DCAF12 Beta-prop_WDR35_TULP_N Beta-prop_SPT8 Beta-prop_EIPR1 NBCH_WD40 Beta-prop_ACSF4 Beta-prop_SCAP PD40 WD_LRWD1
Other DBs
NCBI-GeneID: 8041598
NCBI-ProteinID: XP_002414852
UniProt: B7QI45
LinkDB
Position
Unknown
AA seq 325 aa
MAPSSSAPLSHAQTLRSFFQVNCRVKDYQAHSSKVHSVDWSCDGRRLASGSFDKTVSIFA
LDKDRMAKDHVFKGHGDSVDQLCWHPSNPDQLATASLDKTVRLWDARTQKSVTVVGTKGE
NINICWSPDGQTIAVGNKEDLVSFIDVRSHKVRTDQQFKFEVNEISWNNANTHFFLTSGQ
GCIHILSYPSLQLEMVLGAHPANCICIEFDPTGRYFATGSVDALVSLWDVEELACVRTFS
RLEWPVRTISFSHDEKMLASASEDLLIDIADVETGEKIFEVPCESPTFTIAWHPKRHLLA
FACDDKGERDQDAGTVKLFGLPSSS
NT seq 978 nt   +upstreamnt  +downstreamnt
atggcaccgagcagcagcgcgccgcttagccacgctcaaacgctccgtagctttttccag
gtcaactgccgcgtcaaagactaccaggctcactcgtccaaggtgcactcggtggactgg
agctgcgatggacggcggttggcctctgggagcttcgacaagaccgtcagcatcttcgcc
ctggacaaggatcgcatggcaaaggaccacgtctttaagggccacggagacagcgtggac
cagctctgctggcacccctccaacccggaccagttggcgaccgccagtttggacaagaca
gtgcgtctgtgggacgctcgcacccagaagtcggtcaccgtcgtcggaacaaaaggggag
aacattaacatctgctggtcgcccgacgggcagacgatagcggtgggcaacaaggaggac
ctggtgtccttcatcgacgtgcgctcccacaaggtgcgcacggaccagcagttcaagttc
gaggtgaacgagatctcctggaacaacgcaaacacccacttcttcctcaccagcgggcaa
gggtgcatacacattctcagctacccaagcctgcagctggagatggttctgggggcccac
ccggccaactgcatctgcatcgagttcgaccccactggcaggtactttgccacaggcagt
gtggatgctctcgtcagcctctgggatgtcgaggagctggcgtgcgtacgcaccttctcc
cggttggagtggcctgtgagaaccatcagcttcagccatgacgaaaaaatgctagcgtct
gcttcggaagatcttctcatcgacattgcagacgtcgagacaggggaaaagattttcgag
gtgccctgcgagtcgccgacgttcacaatagcctggcaccccaagcgccaccttctggcc
tttgcctgcgacgacaagggggaaagggaccaagacgcgggaacggtcaagctctttggc
ctgcctagctcctcgtga

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